Can you also attach a copy of the script /Applications/LyX.app/Contents/Resources/scripts/lyxsweave.R ?
Regards, Yihui -- Yihui Xie <xieyi...@gmail.com> Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Wed, Feb 8, 2012 at 4:06 PM, Graham Smith <myotis...@gmail.com> wrote: > Yihui > > >> This is confusing to me. Ideally Sweave should write that file in the >> temp folder, and R will clean up the temp dir string in the tex >> output. However, in your case, both tasks failed. Have you set up any >> Sweave options like prefix and prefix.string in your document? Or have >> you ever changed the Sweave module in LyX? What are the first few >> lines of messages when you compile the document? (View-->View >> Messages) > > > Not as confusing as it is to me :-( > > It's identical to the file that compiled in October, I opened the Lyx file > and tried to compile it and couldn't because I got this error, then opened > it in Lyx/Ubuntu and it compiled fine. > > I have pasted the lines from View-->Messages errors come half way through, > so I thought this would be more informative than just the firet few lines > > 21:59:54.210: Previewing ... > > 21:59:54.218: (buffer-view: ⌘R) > > 21:59:54.299: Rscript --verbose --no-save --no-restore > "/Applications/LyX.app/Contents/Resources/scripts/lyxsweave.R" > "/var/folders/g3/h89z1g_n7yv3fth6y2yd2nlh0000gn/T/lyx_tmpdir.JL3034/lyx_tmpbuf2/""R-GettingStarted.Rnw" > "/var/folders/g3/h89z1g_n7yv3fth6y2yd2nlh0000gn/T/lyx_tmpdir.JL3034/lyx_tmpbuf2/""R-GettingStarted.tex" > UTF-8 "/Users/graham/Dropbox/projects/R-Intro_Oct2011/" > > 21:59:54.302: running > > 21:59:54.302: '/Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R > --slave --no-restore --no-save --no-restore > --file=/Applications/LyX.app/Contents/Resources/scripts/lyxsweave.R --args > /var/folders/g3 > > 21:59:54.302: > /h89z1g_n7yv3fth6y2yd2nlh0000gn/T/lyx_tmpdir.JL3034/lyx_tmpbuf2/R-GettingStarted.Rnw > /var/folders/g3/h89z1g_n7yv3fth6y2yd2nlh0000gn/T/lyx_tmpdir.JL3034/lyx_tmpbuf2/R-GettingStarted.tex > UTF-8' > > 21:59:54.302: > > 21:59:54.609: Writing to file > /var/folders/g3/h89z1g_n7yv3fth6y2yd2nlh0000gn/T/lyx_tmpdir.JL3034/lyx_tmpbuf2/R-GettingStarted.tex > > 21:59:54.611: Processing code chunks with options ... > > 21:59:54.627: 1 : keep.source term verbatim > > 21:59:54.646: 2 : echo keep.source > > 21:59:54.648: 3 : echo keep.source term verbatim > > 21:59:54.662: 4 : echo keep.source > > 21:59:54.664: 5 : echo keep.source > > 21:59:54.666: 6 : echo keep.source term verbatim > > 21:59:54.671: 7 : echo keep.source > > 21:59:54.674: 8 : echo keep.source term verbatim > > 21:59:54.686: 9 : echo keep.source > > 21:59:54.687: 10 : echo keep.source > > 21:59:54.689: 11 : echo keep.source > > 21:59:54.692: 12 : echo keep.source term verbatim pdf > > 21:59:54.748: > > 21:59:54.748: You can now run (pdf)latex on > '/var/folders/g3/h89z1g_n7yv3fth6y2yd2nlh0000gn/T/lyx_tmpdir.JL3034/lyx_tmpbuf2/R-GettingStarted.tex' > > 21:59:54.748: Warning message: > > 21:59:54.748: In readLines(f[1L], warn = FALSE) : > > 21:59:54.748: invalid input found on input connection > '/var/folders/g3/h89z1g_n7yv3fth6y2yd2nlh0000gn/T/lyx_tmpdir.JL3034/lyx_tmpbuf2/R-GettingStarted.Rnw' > > 21:59:54.778: pdflatex "R-GettingStarted.tex" > > 21:59:54.932: This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011) > > 21:59:54.934: restricted \write18 enabled. > > 21:59:54.940: entering extended mode > > 21:59:54.940: (./R-GettingStarted.tex > > 21:59:54.940: LaTeX2e <2011/06/27> > > 21:59:54.940: Babel <v3.8m> and hyphenation patterns for english, dumylang, > nohyphenation, ge > > 21:59:54.940: rman-x-2011-07-01, ngerman-x-2011-07-01, afrikaans, > ancientgreek, ibycus, arabi > > 21:59:54.941: c, armenian, basque, bulgarian, catalan, pinyin, coptic, > croatian, czech, danis > > 21:59:54.941: h, dutch, ukenglish, usenglishmax, esperanto, estonian, > ethiopic, farsi, finnis > > 21:59:54.941: h, french, galician, german, ngerman, swissgerman, monogreek, > greek, hungarian, > > 21:59:54.941: icelandic, assamese, bengali, gujarati, hindi, kannada, > malayalam, marathi, or > > 21:59:54.941: iya, panjabi, tamil, telugu, indonesian, interlingua, irish, > italian, kurmanji, > > 21:59:54.941: lao, latin, latvian, lithuanian, mongolian, mongolianlmc, > bokmal, nynorsk, pol > > 21:59:54.941: ish, portuguese, romanian, russian, sanskrit, serbian, > serbianc, slovak, sloven > > 21:59:54.941: ian, spanish, swedish, turkish, turkmen, ukrainian, > uppersorbian, welsh, loaded > > 21:59:54.941: . > > 21:59:54.941: > > 21:59:55.396: pdflatex > "R-GettingStarted.tex"/Users/Shared/LyX/lyx-2.0.2/src/support/Systemcall.cpp(243): > Systemcall: 'pdflatex "R-GettingStarted.tex"' finished with exit code 1 > > 21:59:55.550: This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011) > > 21:59:55.550: restricted \write18 enabled. > > 21:59:55.558: entering extended mode > > 21:59:55.559: (./R-GettingStarted.tex > > 21:59:55.559: LaTeX2e <2011/06/27> > > 21:59:55.559: Babel <v3.8m> and hyphenation patterns for english, dumylang, > nohyphenation, ge > > 21:59:55.559: rman-x-2011-07-01, ngerman-x-2011-07-01, afrikaans, > ancientgreek, ibycus, arabi > > 21:59:55.559: c, armenian, basque, bulgarian, catalan, pinyin, coptic, > croatian, czech, danis > > 21:59:55.559: h, dutch, ukenglish, usenglishmax, esperanto, estonian, > ethiopic, farsi, finnis > > 21:59:55.559: h, french, galician, german, ngerman, swissgerman, monogreek, > greek, hungarian, > > 21:59:55.560: icelandic, assamese, bengali, gujarati, hindi, kannada, > malayalam, marathi, or > > 21:59:55.560: iya, panjabi, tamil, telugu, indonesian, interlingua, irish, > italian, kurmanji, > > 21:59:55.560: lao, latin, latvian, lithuanian, mongolian, mongolianlmc, > bokmal, nynorsk, pol > > 21:59:55.560: ish, portuguese, romanian, russian, sanskrit, serbian, > serbianc, slovak, sloven > > 21:59:55.560: ian, spanish, swedish, turkish, turkmen, ukrainian, > uppersorbian, welsh, loaded > > 21:59:55.560: . > > 21:59:55.560: > > /Users/Shared/LyX/lyx-2.0.2/src/support/Systemcall.cpp(243): Systemcall: > 'pdflatex "R-GettingStarted.tex"' finished with exit code 1 > > Error: Cannot view file > > ---------------------------------------- > > File does not exist: > /var/folders/g3/h89z1g_n7yv3fth6y2yd2nlh0000gn/T/lyx_tmpdir.JL3034/lyx_tmpbuf2/R-GettingStarted.pdf > > 21:59:59.296: Error while previewing format: pdf2 > > 22:00:12.128: (dialog-toggle progress) > > >
