It was about making the Table of Content as hyperlinks to the right chapters/sections/subsections.
I guess this was about using tex2pdf to automate hyperref add-ons to a plain document ?
A "lyx solution" was given by Helge Hafting:
layout->document->preamble Then type \usepackage{hyperref}
I usually use: \usepackage[breaklinks=true,colorlinks=true]{hyperref} breaklinks means that a link can be broken up as a part of normal line breaking. You effectively get two links to the same. (Well, it doesn't apply to the TOC, but to page/section references and urls in the document.
colorlinks makes all links colored, so people can see where the links are. This is a matter of taste, it may be too much color for some.
Helge Hafting