Am Samstag, 20. Februar 2016 um 20:52:23, schrieb Guenter Milde 
<mi...@users.sf.net>
> 
> OTOH, I am pretty sure this has something to do with some of the used
> LaTeX packages not beeing fit for Xe/LuaTeX. Maybe you can bisect or we
> need to compare the complete list of included packages and their
> versions.
> 

I investigated a little. Trying to compile manually (export as luatex, use 
bibtex, use lualatex) I found what is causing lualatex/bibtex to misbehave.

1.) bibtex does not like the string 'jacsat' (biblioExample.bib:61, entry 
Arduengo1994). Enclosing it in '{}' cures it. E.g. 'journal = {jacsat},'.
2.) lualatex does not like the construct (biblioExample.bib:36, entry: 
Eisenstein2005)
        $\mbox{IrH}_{\mbox{5}}(\mbox{PPh}_{\mbox{3}})_{\mbox{2}}$
in title. Especially the last '_' is causing trouble. So for instance
        $\mbox{IrH}_{\mbox{5}}(\mbox{PPh}_{\mbox{3}}){\mbox{2}}$
is OK.
Also if using '{}' instead of '()' there is no problem.

So, what to do with this biblio entry?

        Kornel

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