The disembodied voice was chilling in its rage. A gunman, holed up in the 
Oberoi Trident hotel in Mumbai (formerly Bombay), where some 40 people had been 
taken hostage, told an Indian news channel that the attacks were revenge for 
the persecution of Muslims in India. "We love this as our country, but when our 
mothers and sisters were being killed, where was everybody?" he asked via 
telephone. No answer came. But then he probably wasn't expecting one. 

The roots of Muslim rage run deep in India, nourished by a long-held sense of 
injustice over what many Indian Muslims believe is institutionalized 
discrimination against the country's largest minority group. The disparities 
between Muslims, who make up 13.4% of the population, and India's Hindus, who 
hover at around 80%, are striking. There are exceptions, of course, but 
generally speaking, Muslim Indians have shorter life spans, worse health, lower 
literacy levels and lower-paying jobs. Add to that toxic brew the lingering 
resentment over 2002's anti-Muslim riots in the state of Gujarat. The riots, 
instigated by Hindu nationalists, killed some 2,000 people, most of them 
Muslims. To this day, few of the perpetrators have been convicted. (See 
pictures of the terrorist shootings in Mumbai.) 

The huge gap between Muslims and Hindus will continue to haunt India's — and 
neighboring Pakistan's — progress toward peace and prosperity. But before 
intercommunal relations can improve, there are even bigger problems that must 
first be worked out: the schism in subcontinental Islam and the religion's 
place and role in modern India and Pakistan. It is a crisis 150 years in the 
making. 

The Beginning of the Problem 
On the afternoon of March 29, 1857, Mangal Pandey, a handsome, mustachioed 
soldier in the East India Company's native regiment, attacked his British 
lieutenant. His hanging a week later sparked a subcontinental revolt known to 
Indians as the first war of independence and to the British as the Sepoy 
Mutiny. Retribution was swift, and though Pandey was a Hindu, it was the 
subcontinent's Muslims, whose Mughal King nominally held power in Delhi, who 
bore the brunt of British rage. The remnants of the Mughal Empire were 
dismantled, and 500 years of Muslim supremacy on the subcontinent came to a 
halt. 

Muslim society in India collapsed. The British imposed English as the official 
language. The impact was cataclysmic. Muslims went from near 100% literacy to 
20% within a half-century. The country's educated Muslim élite was effectively 
blocked from administrative jobs in the government. Between 1858 and 1878, only 
57 out of 3,100 graduates of Calcutta University — then the center of South 
Asian education — were Muslims. While discrimination by both Hindus and the 
British played a role, it was as if the whole of Muslim society had retreated 
to lick its collective wounds. 

Out of this period of introspection, two rival movements emerged to foster an 
Islamic ascendancy. Revivalist groups blamed the collapse of their empire on a 
society that had strayed too far from the teachings of the Koran. They promoted 
a return to a purer form of Islam, modeled on the life of the Prophet Muhammad. 
Others embraced the modern ways of their new rulers, seeking Muslim advancement 
through the pursuit of Western sciences, culture and law. From these movements 
two great Islamic institutions were born: Darul Uloom Deoband in northern 
India, rivaled only by Al Azhar University in Cairo for its teaching of Islam, 
and Aligarh Muslim University, a secular institution that promoted Muslim 
culture, philosophy and languages but left religion to the mosque. These two 
schools embody the fundamental split that continues to divide Islam in the 
subcontinent today. "You could say that Deoband and Aligarh are husband and 
wife, born from the same historical events," says Adil Siddiqui, information 
coordinator for Deoband. "But they live at daggers drawn." 

The campus at Deoband is only a three-hour drive from New Delhi through the 
modern megasuburb of Noida. Strip malls and monster shopping complexes have 
consumed many of the mango groves that once framed the road to Deoband, but the 
contemporary world stops at the gate. The courtyards are packed with bearded 
young men wearing long, collared shirts and white caps. The air thrums with the 
voices of hundreds of students reciting the Koran from open-door classrooms. 

See TIME's Pictures of the Week. 

Founded in 1866, the Deoband school quickly set itself apart from other 
traditional madrasahs, which were usually based in the home of the village 
mosque's prayer leader. Deoband's founders, a group of Muslim scholars from New 
Delhi, instituted a regimented system of classrooms, coursework, texts and 
exams. Instruction is in Urdu, Persian and Arabic, and the curriculum closely 
follows the teachings of the 18th century Indian Islamic scholar Mullah 
Nizamuddin Sehalvi. Graduates go on to study at Cairo's Al Azhar or the Islamic 
University of Medina in Saudi Arabia, or they found their own Deobandi 
institutions. 

Today, more than 9,000 Deobandi madrasahs are scattered throughout India, 
Afghanistan and Pakistan, most infamously the Dara-ul-Uloom Haqaniya Akora 
Khattak, near Peshawar, Pakistan, where Mullah Mohammed Omar and several other 
leaders of Afghanistan's Taliban first tasted a life lived in accordance with 
Shari'a. Siddiqui visibly stiffens when those names are brought up. They have 
become synonymous with Islamic radicalism, and Siddiqui is careful to 
dissociate his institution from those who carry on its traditions, without 
actually condemning their actions. "Our books are being taught there," he says. 
"They have the same system and rules. But if someone is following the path of 
terrorism, it is because of local compulsions and local politics." 

Sir Syed Ahmad Khan, who founded the Anglo-Mohammedan Oriental College at 
Aligarh in 1877, studied under the same teachers as the founders of Deoband. 
But he believed that the downfall of India's Muslims was due to their 
unwillingness to embrace modern ways. He decoupled religion from education and 
in his school sought to emulate the culture and training of India's new 
colonial masters. Islamic culture was part of the curriculum, but so were the 
latest advances in sciences, medicine and Western philosophy. The medium was 
English, the better to prepare students for civil-service jobs. He called his 
school the Oxford of the East. In architecture alone, the campus lives up to 
that name. A euphoric blend of clock towers, crenellated battlements, Mughal 
arches, domes and the staid red brick of Victorian institutions that only 
India's enthusiastic embrace of all things European could produce, the central 
campus of Aligarh today is haven to a diverse crowd of male and female, Hindu 
and Muslim students. Its law and medicine schools are among the top-ranked in 
India, but so are its arts faculty and Quranic Studies Centre. "With all this 
diversity, language, culture, secularism was the only way to go forward as a 
nation," says Aligarh's vice chancellor, P.K. Abdul Azis. "It was the new 
religion." 

This fracture in religious doctrine — whether Islam should embrace the modern 
or revert to its fundamental origins — between two schools less than a day's 
donkey ride apart when they were founded, was barely remarked upon at the time. 
But over the course of the next 100 years, that tiny crack would split Islam 
into two warring ideologies with repercussions that reverberate around the 
world to this day. Before the split became a crisis, however, the founders of 
the Deoband and Aligarh universities shared the common goal of an independent 
India. Pedagogical leanings were overlooked as students and staff of both 
institutions joined with Hindus across the subcontinent to remove the yoke of 
colonial rule in the early decades of the 20th century. 

Two Faiths, Two Nations 
But nationalistic trends were pulling at the fragile alliance, and India began 
to splinter along ethnic and religious lines. Following World War I, a populist 
Muslim poet-philosopher by the name of Muhammad Iqbal framed the Islamic 
zeitgeist when he questioned the position of minority Muslims in a future, 
independent India. The solution, Iqbal proposed, was an independent state for 
Muslim-majority provinces in northwestern India, a separate country where 
Muslims would rule themselves. The idea of Pakistan was born. 

Mohammed Ali Jinnah, the Savile Row–suited lawyer who midwifed Pakistan into 
existence on Aug. 14, 1947, was notoriously ambiguous about how he envisioned 
the country once it became an independent state. Both he and Iqbal, who were 
friends until the poet's death in 1938, had repeatedly stated their dream for a 
"modern, moderate and very enlightened Pakistan," says Sharifuddin Pirzada, 
Jinnah's personal secretary. Jinnah's own wish was that the Pakistani people, 
as members of a new, modern and democratic nation, would decide the country's 
direction. 

But rarely in Pakistan's history have its people lived Jinnah's vision of a 
modern Muslim democracy. Only three times in its 62-year history has Pakistan 
seen a peaceful, democratic transition of power. With four disparate provinces, 
more than a dozen languages and dialects, and powerful neighbors, the country's 
leaders — be they Presidents, Prime Ministers or army chiefs — have been forced 
to knit the nation together with the only thing Pakistanis have in common: 
religion. 

Following the 1971 civil war, when East Pakistan, now Bangladesh, broke away, 
the populist Prime Minister Zulfikar Ali Bhutto embarked on a Muslim-identity 
program to prevent the country from fracturing further. General Mohammed Zia 
ul-Haq continued the Islamization campaign when he overthrew Bhutto in 1977, 
hoping to garner favor with the religious parties, the only constituency 
available to a military dictator. He instituted Shari'a courts, made blasphemy 
illegal and established laws that punished fornicators with lashes and held 
that rape victims could be convicted of adultery. When the Soviet Union invaded 
neighboring Afghanistan in December 1979, Pakistan was already poised for its 
own Islamic revolution. 

Almost overnight, thousands of refugees poured over the border into Pakistan. 
Camps mushroomed, and so did madrasahs. Ostensibly created to educate the 
refugees, they provided the ideal recruiting ground for a new breed of soldier: 
mujahedin, or holy warriors, trained to vanquish the infidel invaders in 
America's proxy war with the Soviet Union. Thousands of Pakistanis joined 
fellow Muslims from across the world to fight the Soviets. As far away as 
Karachi, high school kids started wearing "jihadi jackets," the pocketed vests 
popular with the mujahedin. Says Hamid Gul, then head of the Pakistan 
intelligence agency charged with arming and training the mujahedin: "In the 
1980s, the world watched the people of Afghanistan stand up to tyranny, 
oppression and slavery. The spirit of jihad was rekindled, and it gave a new 
vision to the youth of Pakistan." 

But jihad, as it is described in the Koran, does not end merely with political 
gain. It ends in a perfect Islamic state. The West's, and Pakistan's, cynical 
resurrection of something so profoundly powerful and complex unleashed a force 
that gave root to al-Qaeda's rage, the Taliban's dream of an Islamic utopia in 
Afghanistan, and in the dozens of radical Islamic groups rapidly replicating 
themselves in India and around the world today. "The promise of jihad was never 
fulfilled," says Gul. "Is it any wonder the fighting continues to this day?" 
Religion may have been used to unite Pakistan, but it is also tearing it apart. 

India Today 
In India, Islam is, in contrast, the other — purged by the British, denigrated 
by the Hindu right, mistrusted by the majority, marginalized by society. There 
are nearly as many Muslims in India as in all of Pakistan, but in a nation of 
more than a billion, they are still a minority, with all the burdens that 
minorities anywhere carry. Government surveys show that Muslims live shorter, 
poorer and unhealthier lives than Hindus and are often excluded from the better 
jobs. To be sure, there are Muslim success stories in the booming economy. Azim 
Premji, the founder of the outsourcing giant Wipro, is one of the richest 
individuals in India. But for many Muslims, the inequality of the boom has 
reinforced their exclusion. 

Kashmir, a Muslim-dominated state whose fate had been left undecided in the 
chaos that led up to partition, remains a suppurating wound in India's Muslim 
psyche. As the cause of three wars between India and Pakistan — one of which 
nearly went nuclear in 1999 — Kashmir has become a symbol of profound injustice 
to Indian Muslims, who believe that their government cares little for Kashmir's 
claim of independence — which is based upon a 1948 U.N. resolution promising a 
plebiscite to determine the Kashmiri people's future. That frustration has 
spilled into the rest of India in the form of several devastating terrorist 
attacks that have made Indian Muslims both perpetrators and victims. 

A mounting sense of persecution, fueled by the government's seeming reluctance 
to address the brutal anti-Muslim riots that killed more than 2,000 in the 
state of Gujarat in 2002, has aided the cause of homegrown militant groups. 
They include the banned Student Islamic Movement of India (SIMI), which was 
accused of detonating nine bombs in Mumbai during the course of 2003, killing 
close to 80. The 2006 terrorist attacks on the Mumbai commuter-rail system that 
killed 183 people were also blamed on SIMI as well as the pro-Kashmir Pakistani 
terrorist group Lashkar-e-Toiba (LeT). Those incidents exposed the 
all-too-common Hindu belief that Muslims aren't really Indian. "LeT, SIMI — it 
doesn't matter who was behind these attacks. They are all children of [Pervez] 
Musharraf," sneered Manish Shah, a Mumbai resident who lost his best friend in 
the explosions, referring to the then President of Pakistan. In India, unlike 
Pakistan, Islam does not unify but divide. 

Still, many South Asian Muslims insist Islam is the one and only force that can 
bring the subcontinent together and return it to pre-eminence as a single 
whole. "We [Muslims] were the legal rulers of India, and in 1857 the British 
took that away from us," says Tarik Jan, a gentle-mannered scholar at 
Islamabad's Institute of Policy Studies. "In 1947 they should have given that 
back to the Muslims." Jan is no militant, but he pines for the golden era of 
the Mughal period in the 1700s and has a fervent desire to see India, Pakistan 
and Bangladesh reunited under Islamic rule. 

That sense of injustice is at the root of Muslim identity today. It has 
permeated every aspect of society and forms the basis of rising Islamic 
radicalism on the subcontinent. "People are hungry for justice," says Ahmed 
Rashid, a Pakistani journalist and author of the new book Descent into Chaos. 
"It is perceived to be the fundamental promise of the Koran." These twin 
phenomena — the longing many Muslims feel to see their religion restored as the 
subcontinent's core, and the marks of both piety and extremism Islam bears — 
reflect the lack of strong political and civic institutions in the region for 
people to have faith in. If the subcontinent's governments can't provide those 
institutions, then terrorists like the Trident's mysterious caller will 
continue asking questions. And providing their own answers. 

— With reporting by Jyoti Thottam / Mumbai and Ershad Mahmud / Islamabad

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