As stated above, it's the expected behavior. The workspace is used to build 
with

   - Jenkins/jobs/[jobname]
   -  Jenkins/jobs/[jobname]@script  (for pipeline Jenkinsfile script 
   checkout)
   
This is kind of a scratch space. You may want to clean that folder between 
build if you don't want incremental glitch into your build. I personnaly 
put it on a different disk that may get replaced more often and I don't 
backup those workspace.

The Jenkins/jobs/[jobname]/builds/[buildnumber] is the build result folder, 
so archived artifacts, generated info per build en up there. This is what 
you may want to backup along the config.

Jerome

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