I may be on to something:
if I move the vcpkg build out of the hugin++ source directory, then wxWidgets 
is found:

Found wxWidgets: 
-L/usr/lib/x86_64-linux-gnu;-pthread;;;-lwx_baseu-3.0;-lwx_gtk2u_core-3.0;-lwx_gtk2u_aui-3.0;-lwx_gtk2u_xrc-3.0;-lwx_gtk2u_html-3.0;-lwx_baseu_xml-3.0;-lwx_gtk2u_adv-3.0;-lwx_gtk2u_gl-3.0;-lwx_baseu_net-3.0;-lwx_gtk2u_qa-3.0
 (found version "3.0.4")

but vcpkg is obviously not found :

CMake Error at CMakeLists.txt:112 (include):
  include could not find load file:
    vcpkg/scripts/buildsystems/vcpkg.cmake

And if vcpkg is in the hugin++ source dir, the opposite happens (see output of 
my previous message).

I guess I have to install vcpkg on the system, which is what I'm looking for 
right now.

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