Hello,
Thanks a lot to everyone for the numerous clues.
Best regards,
David.
Le 10/10/2017 à 18:55, Shaun Jackman a écrit :
Hi, David. Two options:
1. Use Biomake, which is mostly compatible with GNU Make, and supports
submitting jobs to Slurm.
https://github.com/evoldoers/biomake
It can be installed with Linuxbrew on Linux or Homebrew on macOS.
brew install homebrew/science/biomake
2. Precede each command that you want to run on the cluster with
$qsub. Set that variable qsub to submit a job and wait for it to
finish. For example:
# Slurm
qsub=sbatch --wait
# SGE
qsub=qsub -sync y
# PBS
qsub=qsub -Wblock=true
I haven't tried but it seems possible that you could set the variables
SHELL and .SHELLFLAGS to run qsub for every command. See
https://www.gnu.org/software/make/manual/html_node/Choosing-the-Shell.html
Cheers,
Shaun
--
David Delahaye
Professor
Université de Montpellier
LIRMM (UMR 5506)
david.delah...@lirmm.fr
Phone: (+33) (0)4 67 41 86 01
http://www.lirmm.fr/~delahaye/ <http://www.lirmm.fr/%7Edelahaye/>
Université de Montpellier • LIRMM UMR 5506 • CC477
161 rue Ada • 34095 Montpellier Cedex 5 • France
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