Hi, David. Two options: 1. Use Biomake, which is mostly compatible with GNU Make, and supports submitting jobs to Slurm. https://github.com/evoldoers/biomake
It can be installed with Linuxbrew on Linux or Homebrew on macOS. brew install homebrew/science/biomake 2. Precede each command that you want to run on the cluster with $qsub. Set that variable qsub to submit a job and wait for it to finish. For example: # Slurm qsub=sbatch --wait # SGE qsub=qsub -sync y # PBS qsub=qsub -Wblock=true I haven't tried but it seems possible that you could set the variables SHELL and .SHELLFLAGS to run qsub for every command. See https://www.gnu.org/software/make/manual/html_node/Choosing-the-Shell.html Cheers, Shaun _______________________________________________ Help-make mailing list Help-make@gnu.org https://lists.gnu.org/mailman/listinfo/help-make
