On 21/06/15 19:51, Ricardo Wurmus wrote:
The version number is also used in other parts of the URL. How about
this instead (not tested):
Works just fine - attached.
>From d49710b5a87bfdbe3c12222fd7f42f4fc67875e5 Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <donttrust...@gmail.com>
Date: Sun, 21 Jun 2015 20:15:31 +1000
Subject: [PATCH] gnu: Add hmmer.
* gnu/packages/bioinformatics.scm (hmmer): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8dfaff3..bb5f942 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1032,6 +1032,30 @@ several alignment strategies enable effective alignment of RNA-seq reads, in
particular, reads spanning multiple exons.")
(license license:gpl3+)))
+(define-public hmmer
+ (package
+ (name "hmmer")
+ (version "3.1b2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://selab.janelia.org/software/hmmer";
+ (version-prefix version 1) "/"
+ version "/hmmer-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx"))))
+ (build-system gnu-build-system)
+ (native-inputs `(("perl", perl)))
+ (home-page "http://hmmer.janelia.org";)
+ (synopsis "Biosequence analysis using profile hidden Markov models")
+ (description
+ "HMMER is used for searching sequence databases for homologs of protein
+sequences, and for making protein sequence alignments. It implements methods
+using probabilistic models called profile hidden Markov models (profile
+HMMs).")
+ (license license:gpl3+)))
+
(define-public htseq
(package
(name "htseq")
--
2.1.4
