Hi Mark, Yes. I do can able to load the trajectories successfully in VMD with the file format option of ' AMBER coordinate with periodic box'. I am using VMD 1.9 version.
Regards Anu On Fri, Oct 18, 2013 at 1:05 PM, Mark Abraham <mark.j.abra...@gmail.com>wrote: > Can this file be opened in VMD itself? > > Mark > On Oct 18, 2013 6:21 AM, "anu chandra" <anu80...@gmail.com> wrote: > > > Dear Gromacs users, > > > > I am trying to use Gromacs to read AMBER trajectories (mdcrd) for doing > few > > analysis. Unfortunately I ended-up with the following error. > > > > ############################################################ > > GROMACS will now assume it to be a trajectory and will try to open it > using > > the VMD plug-ins. > > This will only work in case the VMD plugins are found and it is a > > trajectory format supported by VMD. > > > > Using VMD plugin: crd (AMBER Coordinates) > > > > Format of file md.crd does not record number of atoms. > > > > ------------------------------------------------------- > > Program g_covar, VERSION 4.6.1 > > Source code file: /usr/local/gromacs-4.6.1/src/gmxlib/trxio.c, line: 1035 > > > > Fatal error: > > Not supported in read_first_frame: md.crd > > For more information and tips for troubleshooting, please check the > GROMACS > > website at http://www.gromacs.org/Documentation/Errors > > ------------------------------------------------------- > > ############################################################ > > > > > > > > While browsing through the GROMACS mail-list, I came to know that it > might > > be a problem with DLOPEN libraries. So I recompiled Gromcas with cmake > > using the following command > > > > ############################################################ > > CMAKE_PREFIX_PATH=/usr/include/libltdl cmake > > -DCMAKE_INSTALL_PREFIX=/usr/local/gromacs -DCMAKE_C_COMPILER=gcc > > -DCMAKE_CXX_COMPILER=g++ -DFFTWF_LIBRARY=/usr/lib/libfftw3f.a > > -DFFTWF_INCLUDE_DIR=/usr/lib/ ../ > > ############################################################ > > > > But, the same problem came-up again. Can anyone help me to figure out > what > > went wrong with my Gromacs installation? > > > > Many thanks in advance. > > > > Regards > > Anu > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
