Dear Gromacs users, I am trying to use Gromacs to read AMBER trajectories (mdcrd) for doing few analysis. Unfortunately I ended-up with the following error.
############################################################ GROMACS will now assume it to be a trajectory and will try to open it using the VMD plug-ins. This will only work in case the VMD plugins are found and it is a trajectory format supported by VMD. Using VMD plugin: crd (AMBER Coordinates) Format of file md.crd does not record number of atoms. ------------------------------------------------------- Program g_covar, VERSION 4.6.1 Source code file: /usr/local/gromacs-4.6.1/src/gmxlib/trxio.c, line: 1035 Fatal error: Not supported in read_first_frame: md.crd For more information and tips for troubleshooting, please check the GROMACS website at http://www.gromacs.org/Documentation/Errors ------------------------------------------------------- ############################################################ While browsing through the GROMACS mail-list, I came to know that it might be a problem with DLOPEN libraries. So I recompiled Gromcas with cmake using the following command ############################################################ CMAKE_PREFIX_PATH=/usr/include/libltdl cmake -DCMAKE_INSTALL_PREFIX=/usr/local/gromacs -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DFFTWF_LIBRARY=/usr/lib/libfftw3f.a -DFFTWF_INCLUDE_DIR=/usr/lib/ ../ ############################################################ But, the same problem came-up again. Can anyone help me to figure out what went wrong with my Gromacs installation? Many thanks in advance. Regards Anu -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
