Dear all,
I am doing membrane protein simulation by using amber force field. The lipid
force field parameters are from the lipid11.dat from Amber. Firstly, i got the
xx.prmtop and xx.prmcrd files, and then i used amb2gmx.pl to convert the
xx.prmtop and xx.prmcrd files into gromacs files xx.top and xx.gro files.
However, i found there is some problem with the xx.top files. For example,
there are two dihedral parameters, and they should be same, but in the xx.top
file (gromacs form) ,they are different. I have no idea where the problem is
from.
Any information is appreciated!
Fugui
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
