I'm basically trying to see how the distance between the ligand and protein changes with time using their centres of mass and the only way I've come across is by using g_dist.
I'm pasting the contents from the terminal after the doing a gmxcheck on the md_0_1.xtc file which is my .xtc file from the production simulation. Checking file md_0_1.xtc Reading frame 0 time 0.000 # Atoms 33037 Precision 0.001 (nm) Last frame 1000 time 2000.000 Item #frames Timestep (ps) Step 1001 2 Time 1001 2 Lambda 0 Coords 1001 2 Velocities 0 Forces 0 Box 1001 2 can I attach the index.ndx file again? Was this what you were looking for? index.ndx <http://gromacs.5086.x6.nabble.com/file/n5010738/index.ndx> thank you, chinnu -- View this message in context: http://gromacs.5086.x6.nabble.com/error-with-g-dist-tp5010736p5010738.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
