Hello all, I am trying to find the distance between 2 centres of mass using g_dist.
I use the command: g_dist -s md_0_1.tpr -f md_0_1.xtc -o dist.xvg -n index.ndx but i get the error: Fatal error: Molecule in topology has atom numbers below and above natoms (1707). You are probably trying to use a trajectory which does not match the first 1707 atoms of the run input file. You can make a matching run input file with tpbconv. For more information and tips for troubleshooting, please check the GROMACS website at http://www.gromacs.org/Documentation/Errors I tried using tpbconv like suggested. But that did not help. I really need help on this as my submission deadline is getting closer and this is the last simulation I need.. Thank you so much in advance Chinnu -- View this message in context: http://gromacs.5086.x6.nabble.com/error-with-g-dist-tp5010736.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
