On 8/7/13 2:36 PM, ypca wrote:
Thank you very much for the answers Justin.
I also would like to know if i could calculate RMSD for backbone and side
chains without the hydrogens atoms, is it possible?
Of course. Please refer to basic tutorial material and read in the manual about
index groups, though everything you want to do is covered by default groups; all
you have to do is choose them when running g_rms.
-Justin
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Justin A. Lemkul, Ph.D.
Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalem...@outerbanks.umaryland.edu | (410) 706-7441
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