To install the CUDA I first downloaded and installed the drivers for the Nvidia cards. The command nvidia-smi doen't give me any problems > nvidia-smi Wed Jul 24 17:36:28 2013 +------------------------------------------------------+
| NVIDIA-SMI 4.310.44 Driver Version: 310.44 | |-------------------------------+----------------------+----------------------+ | GPU Name | Bus-Id Disp. | Volatile Uncorr. ECC | | Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. | |===============================+======================+======================| | 0 GeForce GTX 670 | 0000:01:00.0 N/A | N/A | | 16% 57C N/A N/A / N/A | 3% 67MB / 2047MB | N/A Default | +-------------------------------+----------------------+----------------------+ | 1 GeForce GTX 670 | 0000:02:00.0 N/A | N/A | | 71% 82C N/A N/A / N/A | 8% 157MB / 2047MB | N/A Default | +-------------------------------+----------------------+----------------------+ +-----------------------------------------------------------------------------+ | Compute processes: GPU Memory | | GPU PID Process name Usage | |=============================================================================| | 0 Not Supported | | 1 Not Supported | +-----------------------------------------------------------------------------+ Then, I downloaded the CUDA5 release for OpenSuse 12.1 from this page https://developer.nvidia.com/cuda-downloads but didn't reinstall the driver because that would downgrade my driver. Now the cuda lib is found in /usr/local/cuda I added all the repositories and installed all you told me. And that solved the problem for one of the computers The others still have an error in make: [ 55%] Building NVCC (Device) object src/mdlib/nbnxn_cuda/./nbnxn_cuda_generated_nbnxn_cuda.cu.o /home/cuda2/Programas/gromacs-4.6.3/include/types/nbnxn_pairlist.h(216): error: identifier "nbnxn_alloc_t" is undefined /home/cuda2/Programas/gromacs-4.6.3/include/types/nbnxn_pairlist.h(217): error: identifier "nbnxn_free_t" is undefined 2 errors detected in the compilation of "/tmp/tmpxft_000076ad_00000000-11_nbnxn_cuda.compute_20.cpp2.i". CMake Error at CMakeFiles/nbnxn_cuda_generated_nbnxn_cuda.cu.o.cmake:256 (message): Error generating file /home/cuda2/Programas/gromacs-4.6.3/build/src/mdlib/nbnxn_cuda/./nbnxn_cuda_generated_nbnxn_cuda.cu.o make[2]: *** [src/mdlib/nbnxn_cuda/./nbnxn_cuda_generated_nbnxn_cuda.cu.o] Error 1 make[1]: *** [src/mdlib/nbnxn_cuda/CMakeFiles/nbnxn_cuda.dir/all] Error 2 make: *** [all] Error 2 Thank you very much I appreciate your help 2013/7/24 Mirco Wahab <mirco.wa...@chemie.tu-freiberg.de> > On 24.07.2013 04:08, Carlos Bueno wrote: > >> *Hi,* >> *I keep getting errors when I try to install gromacs in OpenSuse 12.1.* >> *I have installed cuda 5.0 and the nvidia cards. **I have tried with >> different parameters for cmake:* >> > > How did you install Cuda5? What did you install and how? > > I have one OpenSuSE 12.1 box that works as a cluster head > and serves to gpu-clusters. Every software except the > nvidia gpu driver is installed on this box for usage by > the nodes. > > Installing a gpu-ready OpenSuSE 12.1 involves (for example, YMMD) > * add community- and extra-repositories through yast/repositories, > these involve (here): > (a) included in yast/repositories (activate only) > Packman Repository > openSUSE BuildService - devel:languages:perl > openSUSE BuildService - devel:languages:python > Education > science > (b) extra (add manually or ba script) > devel:/tools > devel:/libraries:/c_c++ > devel:/gcc > you can do the latter by script: > # > #!/bin/sh > > Uri[1]="http://download.**opensuse.org/repositories/** > devel:/tools/openSUSE_12.1/<http://download.opensuse.org/repositories/devel:/tools/openSUSE_12.1/>" > Name[1]="devel:/tools" > > Uri[2]="http://download.**opensuse.org/repositories/** > devel:/libraries:/c_c++/**openSUSE_12.1/<http://download.opensuse.org/repositories/devel:/libraries:/c_c++/openSUSE_12.1/>" > Name[2]="devel:/libraries:/c_**c++" > > Uri[3]="http://download.**opensuse.org/repositories/** > devel:/gcc/openSUSE_12.1/<http://download.opensuse.org/repositories/devel:/gcc/openSUSE_12.1/>" > Name[3]="devel:/gcc" > # > for i in 1 2 3; do > zypper --gpg-auto-import-keys ar ${Uri[i]} ${Name[i]} > zypper modifyrepo --refresh ${Name[i]} > done > # > > * install gcc 4.6 / g++ 4.6 through yast > * install fftw 3.3.3 through yast, look for the following packages: > gpuclu:~ # rpm -qa |grep fftw > libfftw3-3-3.3.3-5.1.x86_64 > fftw3-devel-3.3.3-5.1.x86_64 > fftw3-3.3-18.1.3.x86_64 > fftw3-threads-3.3-18.1.3.x86_**64 > fftw3-threads-devel-3.3.3-5.1.**x86_64 > libfftw3_threads3-3.3.3-5.1.**x86_64 > * install blas-devel, lapack-devel, gsl-devel through yast > * Important: remove everything Nvidia-related stuff through yast, reboot > * download and install (compile) the gpu driver > NVIDIA-Linux-x86_64-319.32.run > check if it functions properly (after reboot) > * download and install CUDA from Nvidia: > cuda_5.0.35_linux_64_suse12.1-**1.run > > if everything works, the command > nvidia-smi > should display some meaningful output. > > > > my € 0.05 > > M. > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > * Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
