On 24.07.2013 04:08, Carlos Bueno wrote:
*Hi,*
*I keep getting errors when I try to install gromacs in OpenSuse 12.1.*
*I have installed cuda 5.0 and the nvidia cards. **I have tried with
different parameters for cmake:*
How did you install Cuda5? What did you install and how?
I have one OpenSuSE 12.1 box that works as a cluster head
and serves to gpu-clusters. Every software except the
nvidia gpu driver is installed on this box for usage by
the nodes.
Installing a gpu-ready OpenSuSE 12.1 involves (for example, YMMD)
* add community- and extra-repositories through yast/repositories,
these involve (here):
(a) included in yast/repositories (activate only)
Packman Repository
openSUSE BuildService - devel:languages:perl
openSUSE BuildService - devel:languages:python
Education
science
(b) extra (add manually or ba script)
devel:/tools
devel:/libraries:/c_c++
devel:/gcc
you can do the latter by script:
#
#!/bin/sh
Uri[1]="http://download.opensuse.org/repositories/devel:/tools/openSUSE_12.1/";
Name[1]="devel:/tools"
Uri[2]="http://download.opensuse.org/repositories/devel:/libraries:/c_c++/openSUSE_12.1/";
Name[2]="devel:/libraries:/c_c++"
Uri[3]="http://download.opensuse.org/repositories/devel:/gcc/openSUSE_12.1/";
Name[3]="devel:/gcc"
#
for i in 1 2 3; do
zypper --gpg-auto-import-keys ar ${Uri[i]} ${Name[i]}
zypper modifyrepo --refresh ${Name[i]}
done
#
* install gcc 4.6 / g++ 4.6 through yast
* install fftw 3.3.3 through yast, look for the following packages:
gpuclu:~ # rpm -qa |grep fftw
libfftw3-3-3.3.3-5.1.x86_64
fftw3-devel-3.3.3-5.1.x86_64
fftw3-3.3-18.1.3.x86_64
fftw3-threads-3.3-18.1.3.x86_64
fftw3-threads-devel-3.3.3-5.1.x86_64
libfftw3_threads3-3.3.3-5.1.x86_64
* install blas-devel, lapack-devel, gsl-devel through yast
* Important: remove everything Nvidia-related stuff through yast, reboot
* download and install (compile) the gpu driver
NVIDIA-Linux-x86_64-319.32.run
check if it functions properly (after reboot)
* download and install CUDA from Nvidia:
cuda_5.0.35_linux_64_suse12.1-1.run
if everything works, the command
nvidia-smi
should display some meaningful output.
my € 0.05
M.
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
