On 24.07.2013 04:08, Carlos Bueno wrote:
*Hi,*
*I keep getting errors when I try to install gromacs in OpenSuse 12.1.*
*I have installed cuda 5.0 and the nvidia cards. **I have tried with
different parameters for cmake:*

How did you install Cuda5? What did you install and how?

I have one OpenSuSE 12.1 box that works as a cluster head
and serves to gpu-clusters. Every software except the
nvidia gpu driver is installed on this box for usage by
the nodes.

Installing a gpu-ready OpenSuSE 12.1 involves (for example, YMMD)
 * add community- and extra-repositories through yast/repositories,
   these involve (here):
   (a) included in yast/repositories (activate only)
    Packman Repository
    openSUSE BuildService - devel:languages:perl
    openSUSE BuildService - devel:languages:python
    Education
    science
   (b) extra (add manually or ba script)
    devel:/tools
    devel:/libraries:/c_c++
    devel:/gcc
   you can do the latter by script:
     #
     #!/bin/sh

Uri[1]="http://download.opensuse.org/repositories/devel:/tools/openSUSE_12.1/"; Name[1]="devel:/tools"

Uri[2]="http://download.opensuse.org/repositories/devel:/libraries:/c_c++/openSUSE_12.1/"; Name[2]="devel:/libraries:/c_c++"

Uri[3]="http://download.opensuse.org/repositories/devel:/gcc/openSUSE_12.1/"; Name[3]="devel:/gcc"
     #
     for i in 1 2 3; do
        zypper --gpg-auto-import-keys ar ${Uri[i]} ${Name[i]}
        zypper modifyrepo --refresh ${Name[i]}
     done
     #

 * install gcc 4.6 / g++ 4.6 through yast
 * install fftw 3.3.3 through yast, look for the following packages:
   gpuclu:~ # rpm -qa |grep fftw
            libfftw3-3-3.3.3-5.1.x86_64
            fftw3-devel-3.3.3-5.1.x86_64
            fftw3-3.3-18.1.3.x86_64
            fftw3-threads-3.3-18.1.3.x86_64
            fftw3-threads-devel-3.3.3-5.1.x86_64
            libfftw3_threads3-3.3.3-5.1.x86_64
 * install blas-devel, lapack-devel, gsl-devel through yast
 * Important: remove everything Nvidia-related stuff through yast, reboot
 * download and install (compile) the gpu driver
   NVIDIA-Linux-x86_64-319.32.run
   check if it functions properly (after reboot)
 * download and install CUDA from Nvidia:
   cuda_5.0.35_linux_64_suse12.1-1.run

if everything works, the command
  nvidia-smi
should display some meaningful output.



my € 0.05

M.

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