No idea. I do not think there is any need for you to use BUILD_SHARED_LIBS=OFF, and it could well be the problem.
Mark On Thu, Jul 4, 2013 at 11:07 AM, Albert <mailmd2...@gmail.com> wrote: > On 07/04/2013 10:43 AM, Oliver Schillinger wrote: >> >> It seems that GROMACS is looking for a shared library, but you compiled >> FFTW statically (--enable-static). Either recompile FFTW --enable-shared or >> link GROMACS statically by passing -DBUILD_SHARED_LIBS=OFF to cmake. > > > > Hello guys: > > thanks a lot for such warning advices. the fftw error passed after I take > above suggestions, but there is something wrong with CUDA. It is very > strange to me, because I've already specified the cuda path. > > CC=icc FC=ifort F77=ifort CXX=icpc > CMAKE_PREFIX_PATH=/export/intel/cmkl/include/fftw:/export/mpi/mvapich2.amd/1.4 > cmake .. -DGMX_MPI=ON -DCMAKE_INSTALL_PREFIX=/home/albert/install/gromacs > -DGMX_GPU=ON -DBUILD_SHARED_LIBS=OFF -DCUDA_TOOLKIT_ROOT_DIR=/export/cuda5.0 > -DFFTWF_LIBRARY=/home/albert/install/fftw-3.3.3/lib/libfftw3f.so > -DBUILD_SHARED_LIBS=OFF > > > CMake Error: The following variables are used in this project, but they are > set to NOTFOUND. > Please set them or make sure they are set and tested correctly in the CMake > files: > CUDA_CUDART_LIBRARY (ADVANCED) > linked by target "cuda_tools" in directory > /home/albert/install/source/gromacs-4.6.2/src/gmxlib/cuda_tools > linked by target "gpu_utils" in directory > /home/albert/install/source/gromacs-4.6.2/src/gmxlib/gpu_utils > linked by target "nbnxn_cuda" in directory > /home/albert/install/source/gromacs-4.6.2/src/mdlib/nbnxn_cuda > CUDA_TOOLKIT_INCLUDE (ADVANCED) > used as include directory in directory > /home/albert/install/source/gromacs-4.6.2/src/gmxlib/cuda_tools > used as include directory in directory > /home/albert/install/source/gromacs-4.6.2/src/gmxlib/gpu_utils > used as include directory in directory > /home/albert/install/source/gromacs-4.6.2/src/gmxlib/gpu_utils > used as include directory in directory > /home/albert/install/source/gromacs-4.6.2/src/mdlib/nbnxn_cuda > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
