OK I found the problem. I had installed Surfnet the protein cavity finder a few weeks ago, and it turns out this also has a function called genbox! so my silly mistake.
I was wondering why centre and not center. Thanks, Matt On Mon, Jun 10, 2013 at 6:23 PM, Justin Lemkul [via GROMACS] < ml-node+s5086n5009004...@n6.nabble.com> wrote: > > > On 6/10/13 3:26 PM, Matt Bawn wrote: > > >> I have never seen such a prompt, and I cannot reproduce the problem > with > > version > >> 4.5.5 on my machine. Did you install from source, or from some > external > > binary > >> or package manager? Are you running Gromacs directly, or are you using > any > > GUI > >> interface of any sort? Does the problem persist with a non-outdated > > version > >> like 4.6.2? > > > > I am running GROMACS that I installed and compiled myself via cygwin on > a > > windows machine. This prompt has only appeared recently and previously > > following the tutorial instructions did not yield it. I went back to a > > previous structure that had worked and the same prompt now also appears. > I > > can't think of anything that may have changed in the cygwin/gromacs > > environment to cause this. > > > > Got me stumped, and I don't have a Cygwin machine to test with, so I can't > really help much more. That prompt doesn't appear anywhere in the Gromacs > source code, though, so it's really puzzling. Testing with 4.6.2 would be > useful. > > -Justin > > -- > ======================================== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list [hidden > email]<http://user/SendEmail.jtp?type=node&node=5009004&i=0> > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [hidden > email]<http://user/SendEmail.jtp?type=node&node=5009004&i=1>. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > ------------------------------ > If you reply to this email, your message will be added to the discussion > below: > > http://gromacs.5086.x6.nabble.com/Genbox-center-of-box-tp5008990p5009004.html > To unsubscribe from Genbox center of box, click > here<http://gromacs.5086.x6.nabble.com/template/NamlServlet.jtp?macro=unsubscribe_by_code&node=5008990&code=bWF0dGJhd25AZ21haWwuY29tfDUwMDg5OTB8MTMwMTc0MDg2NQ==> > . > NAML<http://gromacs.5086.x6.nabble.com/template/NamlServlet.jtp?macro=macro_viewer&id=instant_html%21nabble%3Aemail.naml&base=nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.view.web.template.NodeNamespace&breadcrumbs=notify_subscribers%21nabble%3Aemail.naml-instant_emails%21nabble%3Aemail.naml-send_instant_email%21nabble%3Aemail.naml> > -- Dr Matt Bawn Research Associate Brooklyn** College CUNY -- View this message in context: http://gromacs.5086.x6.nabble.com/Genbox-center-of-box-tp5008990p5009075.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
