On 6/10/13 3:26 PM, Matt Bawn wrote:
I have never seen such a prompt, and I cannot reproduce the problem with
version
4.5.5 on my machine.  Did you install from source, or from some external
binary
or package manager?  Are you running Gromacs directly, or are you using any
GUI
interface of any sort?  Does the problem persist with a non-outdated
version
like 4.6.2?

I am running GROMACS that I installed and compiled myself via cygwin on a
windows machine. This prompt has only appeared recently and previously
following the tutorial instructions did not yield it. I went back to a
previous structure that had worked and the same prompt now also appears. I
can't think of anything that may have changed in the cygwin/gromacs
environment to cause this.


Got me stumped, and I don't have a Cygwin machine to test with, so I can't really help much more. That prompt doesn't appear anywhere in the Gromacs source code, though, so it's really puzzling. Testing with 4.6.2 would be useful.

-Justin

--
========================================

Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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