What do you not like in your distributions? What are your looking for in these distributions?
I am not sure what you are expecting from the list here … your distributions are fine, but, as Mark noted, it does not mean your simulation and sampling will be optimal … On May 17, 2013, at 3:51 PM, bharat gupta <bharat.85.m...@gmail.com> wrote: > Dear Sir, > > I tried plotting the PE overlap using the following way :- > > 1. extract PE of each replica using g_energy > 2. get the PE distribution using g_analyze -f potential_0.xvg -dist pot0.xvg > 3. used xmgrace to plot all the PE distribution graphs together. > > The same thing I did for temperature distribution for each replica. > > Here's the file for both PE overlap ( > https://www.dropbox.com/s/895f1bi0hkuy884/pe_dist.png) > temp distribution (https://www.dropbox.com/s/ed66uop16blgqwa/temp_dist.png) > Is this the correct way ?? > > > But the plot doesnot look like this ( > https://www.dropbox.com/s/fsuabkl7zrydnib/sample%20PE%20overlap.jpg). Do i > have to normalize the data and then plot in order to get a smooth plot like > this one?? > > -------- > Bharat > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
