Dear Sir, I tried plotting the PE overlap using the following way :-
1. extract PE of each replica using g_energy 2. get the PE distribution using g_analyze -f potential_0.xvg -dist pot0.xvg 3. used xmgrace to plot all the PE distribution graphs together. The same thing I did for temperature distribution for each replica. Here's the file for both PE overlap ( https://www.dropbox.com/s/895f1bi0hkuy884/pe_dist.png) temp distribution (https://www.dropbox.com/s/ed66uop16blgqwa/temp_dist.png) Is this the correct way ?? But the plot doesnot look like this ( https://www.dropbox.com/s/fsuabkl7zrydnib/sample%20PE%20overlap.jpg). Do i have to normalize the data and then plot in order to get a smooth plot like this one?? -------- Bharat -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
