should we worry about the warning ???
On Tue, May 14, 2013 at 7:19 PM, Mark Abraham <mark.j.abra...@gmail.com>wrote: > We'd need a lot more info to start to understand why .tpr vs .gro > does/should affect the result (or not)! > > Mark > On May 14, 2013 2:32 PM, "Sabine Reisser" <sabine.reis...@kit.edu> wrote: > > > Hi, > > > > I'm having the same warning, would also be interested in what it means. > > > > Additionally, I get different results if I use a tpr instead of a gro > file > > in the -s option, using the same trajectory with -f. The results are > > completely different, for the gro file I get 42 while for the tpr file I > > get 2 clusters. > > > > Does anybody know why this is the case? > > > > Cheers > > Sabine > > > > > > > > On 05/10/2013 04:33 PM, Preeti Choudhary wrote: > > > >> hello everyone > >> > >> I am trying to cluster my data using g_cluster.I simulated the whole > >> protein. I did the g_cluster analysis with only certain region of the > >> protein which I specified using an index file.The program runs fine and > >> gives 1 cluster.My concern is the warning it gives which states that :- > >> > >> WARNING: rmsd minimum 0 is below lowest rmsd value 0.0247473 > >> > >> > >> what exactly this warning means ??? > >> > >> -thanks > >> > > > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/**mailman/listinfo/gmx-users< > http://lists.gromacs.org/mailman/listinfo/gmx-users> > > * Please search the archive at http://www.gromacs.org/** > > Support/Mailing_Lists/Search< > http://www.gromacs.org/Support/Mailing_Lists/Search>before posting! > > * Please don't post (un)subscribe requests to the list. Use the www > > interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/**Support/Mailing_Lists< > http://www.gromacs.org/Support/Mailing_Lists> > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
