Ok. Still the distance is beyond the mentioned cut-off. The distance of both OD1 and OD2 of ASP is more than 4 Ang from NH2 of Arg.
Thank you Regards Kavya On Thu, Apr 4, 2013 at 2:25 PM, Justin Lemkul <jalem...@vt.edu> wrote: > > > On 4/4/13 4:34 AM, Kavyashree M wrote: > >> Sir, >> >> Why I mentioned NH2 CG saltbridge because the g_saltbr >> gives the charge group and does not mention the OD2 of ASP >> but mentions only CG. Otherwise it does not make any sense. >> >> > Now I remember how g_saltbr naming works. It measured distances between > charge groups, and the file names are based on the first atom in the charge > group, so "CG" indicates the gamma-carboxylate group of ASP, which includes > both OD1 and OD2. > > > -Justin > > -- > ==============================**========== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> > > ==============================**========== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > * Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
