On 4/4/13 4:34 AM, Kavyashree M wrote:
Sir,
Why I mentioned NH2 CG saltbridge because the g_saltbr
gives the charge group and does not mention the OD2 of ASP
but mentions only CG. Otherwise it does not make any sense.
Now I remember how g_saltbr naming works. It measured distances between charge
groups, and the file names are based on the first atom in the charge group, so
"CG" indicates the gamma-carboxylate group of ASP, which includes both OD1 and OD2.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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