Dear users, I ran grompp on my system:
#grompp -f minim.mdp -c system_inflated.gro -p topol.top -o em.tpr #mdrun -deffnm em When I get the ouput, the potential energy is a positive integer, I think it doesn't seem sensible. Does it? Steepest Descents converged to Fmax < 100 in 4998 steps Potential Energy = 1.1410846e+04 Maximum force = 9.4570084e+01 on atom 8800 Norm of force = 3.2672191e+00 What do you suggest me about my system? Do you think that it has any problem? Sincerely, Shima -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
