Dear Gromacs users I have one big problem with g_clustsize!
I see 9 micelles in my system after running. When I use g_clustsize for number of clusters and average cluster size, they don't emphasize each other, and I see 9 micelles from 360000 ps to 1200000 ps in my box, but results of nclust.xvg is not regular and have very fluctuations. I examine these results in different -cut. Please see my results: nclust.xvg 9.240000e+05 11 9.300000e+05 11 9.360000e+05 9 9.420000e+05 7 9.480000e+05 5 9.540000e+05 6 9.600000e+05 16 9.660000e+05 13 9.720000e+05 13 9.780000e+05 12 9.840000e+05 9 9.900000e+05 12 9.960000e+05 7 1.002000e+06 13 1.008000e+06 10 1.014000e+06 5 1.020000e+06 8 1.026000e+06 4 1.032000e+06 5 1.038000e+06 10 1.044000e+06 10 1.050000e+06 8 1.056000e+06 9 1.062000e+06 8 1.068000e+06 5 1.074000e+06 12 1.080000e+06 11 1.086000e+06 8 1.092000e+06 8 1.098000e+06 9 1.104000e+06 10 1.110000e+06 8 1.116000e+06 10 1.122000e+06 8 1.128000e+06 4 1.134000e+06 5 1.140000e+06 10 1.146000e+06 10 1.152000e+06 11 1.158000e+06 10 1.164000e+06 7 1.170000e+06 6 1.176000e+06 4 1.182000e+06 14 1.188000e+06 8 1.194000e+06 2 1.200000e+06 6 and avclust.xvg: 9.840000e+05 83.333 9.900000e+05 62.500 9.960000e+05 107.143 1.002000e+06 57.692 1.008000e+06 75.000 1.014000e+06 150.000 1.020000e+06 93.750 1.026000e+06 187.500 1.032000e+06 150.000 1.038000e+06 75.000 1.044000e+06 75.000 1.050000e+06 93.750 1.056000e+06 83.333 1.062000e+06 93.750 1.068000e+06 150.000 1.074000e+06 62.500 1.080000e+06 68.182 1.086000e+06 93.750 1.092000e+06 93.750 1.098000e+06 83.333 1.104000e+06 75.000 1.110000e+06 93.750 1.116000e+06 75.000 1.122000e+06 93.750 1.128000e+06 187.500 1.134000e+06 150.000 1.140000e+06 75.000 1.146000e+06 75.000 1.152000e+06 68.182 1.158000e+06 75.000 1.164000e+06 107.143 1.170000e+06 125.000 1.176000e+06 187.500 1.182000e+06 53.571 1.188000e+06 93.750 1.194000e+06 375.000 1.200000e+06 125.000 Whereas the size of clusters in the box are similar when I see with ngmx. I don't know where is my problem!!! May I ask you to help me Please? Best Regards Sara -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
