On 29/08/2012 4:22 PM, Albert wrote:
Dear:
I am trying to extract one frame of my simulation results by commands:
trjconv -f md.trr -s tuned.tpr -o md.xtc -pbc mol -timestep 100 -n
out.ndx
trjconv -f md.xtc -s tuned.tpr -fit rot+trans -o out.pdb -dump
133000.000 -n out.ndx
However, it said:
Fatal error:
Index[31715] 31716 is larger than the number of atoms in the
trajectory file (31715). There is a mismatch in the contents
of your -f, -s and/or -n files.
For more information and tips for troubleshooting, please check the
GROMACS
website at http://www.gromacs.org/Documentation/Errors
Does anybody has any advices?
The error means exactly what it says. You need to think about what's in
those files and why a mismatch is occurring, e.g. you used xtc output
groups smaller than System.
Mark
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