Hey Paul,

cant help you with the plugin issue, but have you instead tried loading the dcd 
trajectory into vmd and save it as trr?
Cheers,
Micha

On 7 Feb 2012, at 18:18, "PAUL NEWMAN" 
<paulcliz...@gmail.com<mailto:paulcliz...@gmail.com>> wrote:

Dear Gromacs users,

This is my second email since I tried the previous advises and did NOT work.

I want to use the Gromacs analysis tools for analyzing Namd output files (*.dcd 
files) I installed Gromacs 4.5.4 (64 bits) and it works well. In addition I 
installed VMD 1.9 (64 bits) and set up 
VMD_PLUGIN_PATH=/home/vmd-1.9/plugins/LINUXAMD64/molfile/   (Here it is located 
the  dcdplugin.so )

I verified that VMD_PLUGIN_PATH is pointing out to the right folder. However 
when I run for example

g_rmsf_d -f file.dcd  -s file.pdb

I got the following error

The file format of file.dcd is not a known trajectory format to GROMACS. Please 
make sure that the file is a trajectory!

GROMACS will now assume it to be a trajectory and will try to open it using the 
VMD plug-ins.
This will only work in case the VMD plugins are found and it is a trajectory 
format supported by VMD.

No plugin for dcd found


Can anyone tell me if Gromacs really works with the VMD pulgin?

I will highly appreciate to know it so I can start looking for another 
alternatives.

Thanks so much

[X]


--
Cheers,

Paul


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