Hey Paul, cant help you with the plugin issue, but have you instead tried loading the dcd trajectory into vmd and save it as trr?
Cheers, Micha On 7 Feb 2012, at 18:18, "PAUL NEWMAN" <paulcliz...@gmail.com<mailto:paulcliz...@gmail.com>> wrote: Dear Gromacs users, This is my second email since I tried the previous advises and did NOT work. I want to use the Gromacs analysis tools for analyzing Namd output files (*.dcd files) I installed Gromacs 4.5.4 (64 bits) and it works well. In addition I installed VMD 1.9 (64 bits) and set up VMD_PLUGIN_PATH=/home/vmd-1.9/plugins/LINUXAMD64/molfile/ (Here it is located the dcdplugin.so ) I verified that VMD_PLUGIN_PATH is pointing out to the right folder. However when I run for example g_rmsf_d -f file.dcd -s file.pdb I got the following error The file format of file.dcd is not a known trajectory format to GROMACS. Please make sure that the file is a trajectory! GROMACS will now assume it to be a trajectory and will try to open it using the VMD plug-ins. This will only work in case the VMD plugins are found and it is a trajectory format supported by VMD. No plugin for dcd found Can anyone tell me if Gromacs really works with the VMD pulgin? I will highly appreciate to know it so I can start looking for another alternatives. Thanks so much [X] -- Cheers, Paul -- gmx-users mailing list gmx-users@gromacs.org<mailto:gmx-users@gromacs.org> http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org<mailto:gmx-users-requ...@gromacs.org>. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
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