Dear Gromacs users, This is my second email since I tried the previous advises and did NOT work.
I want to use the Gromacs analysis tools for analyzing Namd output files (*.dcd files) I installed Gromacs 4.5.4 (64 bits) and it works well. In addition I installed VMD 1.9 (64 bits) and set up VMD_PLUGIN_PATH=/home/vmd-1.9/plugins/LINUXAMD64/molfile/ (Here it is located the dcdplugin.so ) I verified that VMD_PLUGIN_PATH is pointing out to the right folder. However when I run for example *g_rmsf_d -f file.dcd -s file.pdb * I got the following error *The file format of file.dcd is not a known trajectory format to GROMACS. Please make sure that the file is a trajectory! GROMACS will now assume it to be a trajectory and will try to open it using the VMD plug-ins.* * This will only work in case the VMD plugins are found and it is a trajectory format supported by VMD. No plugin for dcd found* Can anyone tell me if Gromacs really works with the VMD pulgin? I will highly appreciate to know it so I can start looking for another alternatives. Thanks so much -- Cheers, Paul
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