I've having some problems with use of the option '-fitall'. The command I'm using is: g_rms -hidden -fitall -s ../topol_amber.tpr -f ../amber99sb_skip10.xtc -f2 ../amber99sb_skip10.xtc -m rmsd.xpm
But a diff with the rmsd.xpm file I got without using '-fitall' reveals that the files are identical. Furthermore, the rmsd.xpm file represents a non-symetric matrix, which is not what I expected... Anyone has a clue of what's happening? Thanks in advance, Víctor -- Víctor Gil Sepúlveda E. Informatica - FIB - UPC
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