Hey Mark, thanks for your help. It was extremely useful, now it's solved and running XD.
Nice year friend :) Willian Felix On Sat, Dec 31, 2011 at 10:36 PM, Mark Abraham <mark.abra...@anu.edu.au>wrote: > On 31/12/2011 11:58 PM, Willian Pereira Felix wrote: > > Hello buddies, > > I'm a very beginner in gromacs and I just got a trick but simple > situation (for you :D). After the installation of my gromacs on ubuntu > 11.10 I opened the .bashrc file and put the following code in the following > place as instructed by installation session on the webpage: > > .BASHRC file > # Add an "alert" alias for long running commands. Use like so: > # sleep 10; alert > alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal > || echo error)" "$(history|tail -n1|sed -e > '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"' > > # Alias definitions. > # You may want to put all your additions into a separate file like > # ~/.bash_aliases, instead of adding them here directly. > # See /usr/share/doc/bash-doc/examples in the bash-doc package. > > if [ -f ~/.bash_aliases ]; then > . ~/.bash_aliases > fi > > #this should be an access to gromacs > source . /usr/local/gromacs/bin/GMXRC > > > "source" and dot are synonyms... use only one, as instructed here: > http://www.gromacs.org/Downloads/Installation_Instructions#Getting_access_to_GROMACS_after_installation. > This "includes" the contents of that file into the rc file, and propagates > the changes to the calling shell. > > Mark > > > > # enable programmable completion features (you don't need to enable > # this, if it's already enabled in /etc/bash.bashrc and /etc/profile > # sources /etc/bash.bashrc). > if [ -f /etc/bash_completion ] && ! shopt -oq posix; then > . /etc/bash_completion > fi > > I already tried using . /usr/local/gromacs/GMXRC in the begin and also > just /usr/local/gromacs/GMXRC (without the point) and even thereafter I > couldn't run the program. Unfortunately I really don't know what to do I've > already read the final installation instructions many times and tried to > google something related but I had no luck. > > Please someone can provide me some light on this issue?? > > Thanks all of you. > > Willian Felix > > > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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