Dear gmx-users, I want to make a long nano-fiber composed of many non-covalently bonded proteins, it elongates along the Z axial direction.
in editconf, we can define the "Distance between the solute and the box", but it works for x,y and z directions at the same time. e.g. my command editconf -f protein.gro -o protein_box.gro -c -d 1.0 -bt cubic, then the out come would be a box with of at least 1.0 nm "between any two periodic images of a protein". What should I do if I want to set the distance for z axis smaller than x and y? which means, let the molecules along Z "see" each other within 2nm? Thanks! Xiaojia
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
