On Tue, Nov 8, 2011 at 5:59 PM, Mark Abraham <mark.abra...@anu.edu.au>wrote:
> On 8/11/2011 11:35 PM, Szilárd Páll wrote: > > Additionally, AFAIK you will get better performance if you compile > > with MSVC which should be fairly easy if you use CMake - I'm not > > entirely sure about this > > I'd be surprised. Why should MSVC outperform gcc? > The file performance is horrible with cygwin (even much slower than a virtual machine). But this should only be important for analysis. For simulation I agree that the performance should be as good (I don't know about NUMA) . Roland > > Mark > > > though. > > Cheers, > > -- > > Szilárd > > > > > > > > On Tue, Nov 8, 2011 at 12:41 PM,<bh...@udsu.ru> wrote: > >> Help me. > >> I want to install Gromacs 4.5.5 with usage CygWin. > >> When I execute a command "make" I receive the error report: > >> > >> numa_malloc.c:117: error: expected '> ' before ' Processor' > >> numa_malloc.c:117: error: expected '> ' before ' ProcNumber' > >> numa_malloc.c:117: error: expected ' = ', ', ', '; ', ' asm ' > >> or..................... > >> ... > >> make [3]: *** [numa_malloc.lo] Error 1 > >> make [3]: leaving directory '/cygdrive/..... > >> gromacs4.5.5/src/gmxlib/thread_mpi' > >> make [3]: *** [install-recursive] Error 1 > >> make [3]: leaving directory '/cygdrive/..... gromacs4.5.5/src/gmxlib' > >> make [3]: *** [install-recursive] Error 1 > >> make [3]: leaving directory '/cygdrive/..... gromacs4.5.5/src' > >> make [3]: *** [install-recursive] Error 1 > >> > >> Where an error? > >> > >> > >> CygWin it is installed with packets: > >> Section "Devel" > >> - autoconf: Wrapper scripts for autoconf commands > >> - autoconf2.1: Stable version of the automatic configure script builder > >> - autoconf2.5: Development version of the automatic configure script > builder > >> - automake1.9: a tool for generating GNU-compliant Makefiles > >> - binutils: The GNU assembler, linker and binary utilites > >> - gcc: A C compiler upgrade helper > >> - gcc-core: A C compiler > >> - gcc-g ++: A C ++ compiler > >> - gcc-g77: Fortran compiler > >> - gcc-mingw-core: Mingw32 support headers and libraries for GCC > >> - gcc-mingw-g ++: Mingw32 support headers and libraries for GCC A C ++ > >> - gcc-mingw-g77: Mingw32 support headers and libraries for GCC Fortran > >> - libgcc1: GCC compiler support shared runtime > >> - libgdbm-devel: GNU dbm database routines (development) > >> - make: The GNU version of the ` make ` utility > >> - mingw-runtime: MinGW Runtime > >> > >> Section "Interpreters" > >> - perl: Larry Wall ` s Practical Extracting and Report Language > >> > >> Packet FFTW ver.3.2.2 is in addition compiled and installed > >> > >> Trial setting Gromacs of 4.5.3 errors does not give. > >> > >> The instruction on setting took here: > >> http://lists.groma > cs.org/pipermail/gmx-users/2009-September/044792.html > >> > >> The error arises only for version Gromacs 4.5.5 > >> > >> > >> Igor > >> > >> > >> -- > >> gmx-users mailing list gmx-users@gromacs.org > >> http://lists.gromacs.org/mailman/listinfo/gmx-users > >> Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >> Please don't post (un)subscribe requests to the list. Use the > >> www interface or send it to gmx-users-requ...@gromacs.org. > >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > -- ORNL/UT Center for Molecular Biophysics cmb.ornl.gov 865-241-1537, ORNL PO BOX 2008 MS6309
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