On 8/11/2011 11:35 PM, Szilárd Páll wrote:
Hi,
There have been quite some discussion on the topic of GROMACS on
Cygwin so please search the mailing list for information.
Actually I don't think this issue has been addressed. Some NUMA-aware
thread_mpi stuff does not work under Cygwin, and code added since 4.5.4
assumes that it does. I can find no reason to support that assumption.
To work around, use configure --disable-threads.
Some of that information might have not gone into the wiki
(http://goo.gl/ALQuC) - especially that the page appears to be intact
for the last 7 months. [Which is a pity and it would be really much
appreciated if people in the future contribute back!!!]
Additionally, AFAIK you will get better performance if you compile
with MSVC which should be fairly easy if you use CMake - I'm not
entirely sure about this
I'd be surprised. Why should MSVC outperform gcc?
Mark
though.
Cheers,
--
Szilárd
On Tue, Nov 8, 2011 at 12:41 PM,<bh...@udsu.ru> wrote:
Help me.
I want to install Gromacs 4.5.5 with usage CygWin.
When I execute a command "make" I receive the error report:
numa_malloc.c:117: error: expected '> ' before ' Processor'
numa_malloc.c:117: error: expected '> ' before ' ProcNumber'
numa_malloc.c:117: error: expected ' = ', ', ', '; ', ' asm '
or.....................
...
make [3]: *** [numa_malloc.lo] Error 1
make [3]: leaving directory '/cygdrive/.....
gromacs4.5.5/src/gmxlib/thread_mpi'
make [3]: *** [install-recursive] Error 1
make [3]: leaving directory '/cygdrive/..... gromacs4.5.5/src/gmxlib'
make [3]: *** [install-recursive] Error 1
make [3]: leaving directory '/cygdrive/..... gromacs4.5.5/src'
make [3]: *** [install-recursive] Error 1
Where an error?
CygWin it is installed with packets:
Section "Devel"
- autoconf: Wrapper scripts for autoconf commands
- autoconf2.1: Stable version of the automatic configure script builder
- autoconf2.5: Development version of the automatic configure script builder
- automake1.9: a tool for generating GNU-compliant Makefiles
- binutils: The GNU assembler, linker and binary utilites
- gcc: A C compiler upgrade helper
- gcc-core: A C compiler
- gcc-g ++: A C ++ compiler
- gcc-g77: Fortran compiler
- gcc-mingw-core: Mingw32 support headers and libraries for GCC
- gcc-mingw-g ++: Mingw32 support headers and libraries for GCC A C ++
- gcc-mingw-g77: Mingw32 support headers and libraries for GCC Fortran
- libgcc1: GCC compiler support shared runtime
- libgdbm-devel: GNU dbm database routines (development)
- make: The GNU version of the ` make ` utility
- mingw-runtime: MinGW Runtime
Section "Interpreters"
- perl: Larry Wall ` s Practical Extracting and Report Language
Packet FFTW ver.3.2.2 is in addition compiled and installed
Trial setting Gromacs of 4.5.3 errors does not give.
The instruction on setting took here:
http://lists.groma cs.org/pipermail/gmx-users/2009-September/044792.html
The error arises only for version Gromacs 4.5.5
Igor
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