On 10/16/2011 2:25 PM, Mark Abraham wrote:
On 15/10/2011 9:02 PM, Mirco Wahab wrote:
On 10/15/2011 1:15 AM, Mark Abraham wrote:
I use
...
...
//Flags used by the compiler during all build types
CMAKE_CXX_FLAGS:STRING=' -msse2 -ip -funroll-all-loops -std=gnu99 '
//Flags used by the compiler during release builds.
CMAKE_CXX_FLAGS_RELEASE:STRING=-mtune=itanium2 -mtune=core2 -O3 -DNDEBUG
//Flags used by the compiler during all build types
CMAKE_C_FLAGS:STRING=' -msse2 -ip -funroll-all-loops -std=gnu99 '
//Flags used by the compiler during release builds.
CMAKE_C_FLAGS_RELEASE:STRING=-mtune=itanium2 -mtune=core2 -O3 -DNDEBUG
...
These are obviously the wrong flags for the detected architecture,
sse2 is no longer available and so are the the mtune architectures.
The correct options for the actual compiler for Intel64 would read:
CMAKE_CXX_FLAGS:STRING=' -msse3 -ip -funroll-all-loops -std=gnu99 '
CMAKE_CXX_FLAGS_RELEASE:STRING=-O3 -DNDEBUG
with some option-warnings but without error.
Sure. GROMACS will not benefit noticeably from the SSE3 instruction set,
so we don't bother looking for it.
OK, I can understand that. But if the options (-mtune ***, -msse2)
are not longer available with the actual free Intel Compiler suites,
shouldn't the cmake definitions be adapted to this fact in order
to avoid loads of compiler warnings?
But the install is broken. On `make install-mdrun`, the scripts would
remove any library from "src/gmxlib/CMakeFiles/CMakeRelink.dir"
and bail out with the error below. Even if you copy the libraries
by hand to CMakeRelink.dir/, the'll get removed by make install-mdrun
before trying to link with them.
...
That looks very weird. What cmake version? What does make install-mdrun
VERBOSE=1 say?
I'll attach the error messages err.msg, 5.9 KB).
- cmake version 2.8.3
- gcc 4.5.1 x64 (Linux) (20101208)
Thanks & regards
Mirco
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cd /home/carlo/Gromacs/build && /usr/bin/cmake -E cmake_depends "Unix
Makefiles" /home/carlo/Gromacs/gromacs-4.5.5
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cd /home/carlo/Gromacs/build/src/kernel && /usr/bin/cmake -DCOMPONENT=libraries
-P /home/carlo/Gromacs/build/cmake_install.cmake
-- Install configuration: "Release"
-- Install component: "libraries"
CMake Error at /home/carlo/Gromacs/build/src/gmxlib/cmake_install.cmake:38
(FILE):
file INSTALL cannot find
"/home/carlo/Gromacs/build/src/gmxlib/CMakeFiles/CMakeRelink.dir/libgmx.so.6".
Call Stack (most recent call first):
/home/carlo/Gromacs/build/src/cmake_install.cmake:37 (INCLUDE)
/home/carlo/Gromacs/build/cmake_install.cmake:40 (INCLUDE)
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--
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