Sir, Thanks a lot for your help......Its working... On Wed, Aug 24, 2011 at 18:34, Justin A. Lemkul <jalem...@vt.edu> wrote: > > > bipin singh wrote: >> >> Thanks for your kind help, >> I have tried as per your suggestion, the below command >> >> g_sham -f 2d_proj.xvg -xmin -5 -xmax 5 -ls gibbs.xpm >> >> It is running without any error , but it is not giving any xpm >> output....... > > Try with "-xmin -5 -5 0 -xmax 5 5 0" - the meaning of the z-axis quantities > here has never been clear to me since -gmax should control the range of > z-values. Leaving them at zero should cause g_sham to calculate the > appropriate range. Otherwise, you're limited to values of z between -5 and 5 > also, which may not be appropriate. > > -Justin > >> On Wed, Aug 24, 2011 at 17:18, Justin A. Lemkul <jalem...@vt.edu> wrote: >>> >>> bipin singh wrote: >>>> >>>> Thanks for your reply, >>>> I am attaching the xpm file which I got from g_sham and also attaching >>>> the eps output got from >>>> xpm2ps.As you can see there is no axis range(PC1 and PC2) labeled in >>>> eps >>>> file. >>>> As the PC1 range is from -4 to +4 and PC2 range from -5 to +4, I want >>>> the x-axis range in eps file from -4 to +4(PC1) >>>> and y-axis range from -5 to +4(PC2) regardless of the data values in xpm >>>> file. >>>> But I am unable to get using .m2p file. >>>> >>> The .m2p file can only be used to adjust axes if the data fit the range >>> you >>> want already. This was unclear from your earlier post. Now that you've >>> said what program you used, we can solve this. g_sham allows you to set >>> the >>> axis manually with the -xmin and -xmax options. Re-run g_sham with these >>> options to set the axes and you should have no problem. >>> >>> -Justin >>> >>>> On Wed, Aug 24, 2011 at 16:22, Justin A. Lemkul <jalem...@vt.edu> wrote: >>>>> >>>>> bipin singh wrote: >>>>>> >>>>>> Hello, >>>>>> I am using the below .m2p file as input for xpm2ps, but not able to >>>>>> get axis range label. >>>>>> >>>>> What axis range do you obtain? If your data do not actually span from >>>>> -4 >>>>> to >>>>> 4, there's not much you can do. I was assuming you had data that did >>>>> fit >>>>> this range. You also didn't say which tool produced the .xpm file; >>>>> some >>>>> programs can be forced to adjust the data range, but others can't. >>>>> >>>>> -Justin >>>>> >>>>>> ; Matrix options >>>>>> titlefont = Helvetica ; Matrix title Postscript Font name >>>>>> titlefontsize = 20.0 ; Matrix title Font size (pt) >>>>>> legend = yes ; Show the legend >>>>>> legendfont = Helvetica ; Legend name Postscript Font name >>>>>> legendfontsize = 12.0 ; Legend name Font size (pt) >>>>>> legendlabel ; Used when there is none in the .xpm >>>>>> legend2label ; Id. when merging two xpm's >>>>>> xbox = 0 ; x-size of a matrix element >>>>>> ybox = 0 ; y-size of a matrix element >>>>>> matrixspacing = 20.0 ; Space between 2 matrices >>>>>> xoffset = 0.0 ; Between matrix and bounding box >>>>>> yoffset = 0.0 ; Between matrix and bounding box >>>>>> >>>>>> ; X-axis options >>>>>> x-lineat0value = no ; Draw line at matrix value==0 >>>>>> x-major = 4 ; Major tick spacing >>>>>> x-minor = 2 ; Id. Minor ticks >>>>>> x-firstmajor = 0 ; Offset for major tick >>>>>> x-majorat0 = no ; Additional Major tick at first frame >>>>>> x-majorticklen = 8.0 ; Length of major ticks >>>>>> x-minorticklen = 4.0 ; Id. Minor ticks >>>>>> x-label = ; Used when there is none in the .xpm >>>>>> x-font = Helvetica ; Axis label PostScript Font >>>>>> x-fontsize = 12 ; Axis label Font size (pt) >>>>>> x-tickfont = Helvetica ; Tick label PostScript Font >>>>>> x-tickfontsize = 8 ; Tick label Font size (pt) >>>>>> >>>>>> ;Y-axis options >>>>>> y-lineat0value = no >>>>>> y-major = 4 >>>>>> y-minor = 2 >>>>>> y-firstmajor = 0 >>>>>> y-majorat0 = no >>>>>> y-majorticklen = 8.0 >>>>>> y-minorticklen = 4.0 >>>>>> y-label = >>>>>> y-fontsize = 12 >>>>>> y-font = Helvetica >>>>>> y-tickfontsize = 8 >>>>>> y-tickfont = Helvetica >>>>>> >>>>>> On Wed, Aug 24, 2011 at 00:52, Justin A. Lemkul <jalem...@vt.edu> >>>>>> wrote: >>>>>>> >>>>>>> bipin singh wrote: >>>>>>>> >>>>>>>> Hello, >>>>>>>> >>>>>>>> I have xpm matrix file, for converting this file to ps format I am >>>>>>>> using >>>>>>>> xpm2ps >>>>>>>> e.g: xpm2ps -f file.xpm -o file.eps . But there is no axis range >>>>>>>> label >>>>>>>> mentioned for x and y-axis, >>>>>>>> in ps file.Please let me know how to set x and y axis range label in >>>>>>>> ps >>>>>>>> file. >>>>>>>> for example I want to set the x and y-axis range from -4 to +4. >>>>>>>> >>>>>>>> >>>>>>> Use an .m2p file: >>>>>>> >>>>>>> http://manual.gromacs.org/online/m2p.html >>>>>>> >>>>>>> -Justin >>>>>>> >>>>>>> -- >>>>>>> ======================================== >>>>>>> >>>>>>> Justin A. Lemkul >>>>>>> Ph.D. Candidate >>>>>>> ICTAS Doctoral Scholar >>>>>>> MILES-IGERT Trainee >>>>>>> Department of Biochemistry >>>>>>> Virginia Tech >>>>>>> Blacksburg, VA >>>>>>> jalemkul[at]vt.edu | (540) 231-9080 >>>>>>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >>>>>>> >>>>>>> ======================================== >>>>>>> -- >>>>>>> gmx-users mailing list gmx-users@gromacs.org >>>>>>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>>>>>> Please search the archive at >>>>>>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>>>>>> Please don't post (un)subscribe requests to the list. Use the www >>>>>>> interface >>>>>>> or send it to gmx-users-requ...@gromacs.org. >>>>>>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>>>>>> >>>>>> >>>>> -- >>>>> ======================================== >>>>> >>>>> Justin A. Lemkul >>>>> Ph.D. Candidate >>>>> ICTAS Doctoral Scholar >>>>> MILES-IGERT Trainee >>>>> Department of Biochemistry >>>>> Virginia Tech >>>>> Blacksburg, VA >>>>> jalemkul[at]vt.edu | (540) 231-9080 >>>>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >>>>> >>>>> ======================================== >>>>> -- >>>>> gmx-users mailing list gmx-users@gromacs.org >>>>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>>>> Please search the archive at >>>>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>>>> Please don't post (un)subscribe requests to the list. Use the www >>>>> interface >>>>> or send it to gmx-users-requ...@gromacs.org. >>>>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>>>> >>>> >>>> >>> -- >>> ======================================== >>> >>> Justin A. Lemkul >>> Ph.D. Candidate >>> ICTAS Doctoral Scholar >>> MILES-IGERT Trainee >>> Department of Biochemistry >>> Virginia Tech >>> Blacksburg, VA >>> jalemkul[at]vt.edu | (540) 231-9080 >>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >>> >>> ======================================== >>> -- >>> gmx-users mailing list gmx-users@gromacs.org >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> Please don't post (un)subscribe requests to the list. Use the www >>> interface >>> or send it to gmx-users-requ...@gromacs.org. >>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >> >> >> > > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
-- ----------------------- Thanks and Regards, Bipin Singh -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
