Hi Gideon, Maybe you want the atomic matrix produced by g_covar -xpma?
Cheers, Tsjerk 2011/8/16 גדעון לפידות <glapid...@gmail.com>: > Thanks for your replies. > I would like to clarify regarding my first questionn. I don't want a g_dist > matrix. I would like to get a covariance matrix where the values correspond > to absolute distance and not dived into different dimensions. for example > say I have a protein with 100 aa and I run g_covar only on Ca I'll get a > 300X300 covariance matrix instead of a 100X100 matrix which is what I want. > is there any built in command in Gromacs that will give me this? > > Thanks, > Gideon > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
