There must be several tools to calculate the angle between two domains connected at a hinge. I was wondering if someone has suggestions on any tools, or whether it is possible to do this using a vmd plugin directly for a trajectory? IN my case, I have a reasonable good idea where the hinge is. I was wondering if the angle between the principal axes of the domains would be good enough? For example, if the domains were two discs attached to a common hinge, how can I find the vector from the hinge in the direction of each disc?
-- Maria G. Technical University of Denmark Copenhagen -- Maria G. Technical University of Denmark Copenhagen
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