Sergio Manzetti wrote:
Thanks,
so LDFLAGS /home/user/gmx
and CPPFLAGS /home/user/gmx for example?
Not quite.
./configure LDFLAGS="-L/usr/lib" CPPFLAGS="-I/usr/include" (presumably)
I still have no idea why configure wouldn't find these locations.
-Justin
On Tue, Jan 11, 2011 at 2:19 PM, Justin A. Lemkul <jalem...@vt.edu
<mailto:jalem...@vt.edu>> wrote:
Sergio Manzetti wrote:
Hi Justin, it was a blank ./configure
I don't know why a standard location like /usr/lib isn't be detected
as containing the libraries, but you can set LDFLAGS and CPPFLAGS
accordingly so that the libraries and headers are found. See the
installation instructions for details.
-Justin
On Tue, Jan 11, 2011 at 2:03 PM, Justin A. Lemkul
<jalem...@vt.edu <mailto:jalem...@vt.edu>
<mailto:jalem...@vt.edu <mailto:jalem...@vt.edu>>> wrote:
Sergio Manzetti wrote:
Dear users, I have installed FFTW3 successfully, and
confirmed
its location using locate:
/home/m/Desktop/gromacs-4.5.3/src/mdlib/gmx_fft_fftw3.c
/usr/lib/libfftw3.so.3
/usr/lib/libfftw3.so.3.2.4
/usr/lib/libfftw3_threads.so.3
/usr/lib/libfftw3_threads.so.3.2.4
/usr/lib/libfftw3f.so.3
/usr/lib/libfftw3f.so.3.2.4
/usr/lib/libfftw3f_threads.so.3
/usr/lib/libfftw3f_threads.so.3.2.4
/usr/lib/libfftw3l.so.3
/usr/lib/libfftw3l.so.3.2.4
/usr/lib/libfftw3l_threads.so.3
/usr/lib/libfftw3l_threads.so.3.2.4
/usr/share/doc/libfftw3-3
/usr/share/doc/libfftw3-3/NEWS.gz
/usr/share/doc/libfftw3-3/README
/usr/share/doc/libfftw3-3/README.Debian
/usr/share/doc/libfftw3-3/changelog.Debian.gz
/usr/share/doc/libfftw3-3/changelog.gz
/usr/share/doc/libfftw3-3/copyright
/var/cache/apt/archives/libfftw3-3_3.2.2-1_i386.deb
/var/lib/dpkg/info/libfftw3-3.list
/var/lib/dpkg/info/libfftw3-3.md5sums
/var/lib/dpkg/info/libfftw3-3.postinst
/var/lib/dpkg/info/libfftw3-3.postrm
/var/lib/dpkg/info/libfftw3-3.shlib
However, when I try installing Gromacs 4.5.3 the -/configure
step yields:
configure: error: Cannot find fftw3f library
What am I doing incorrectly?
Without seeing the command you gave to configure, it's
impossible to
say.
-Justin
Sergio
-- ========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu <http://vt.edu> <http://vt.edu> | (540)
231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
-- gmx-users mailing list gmx-users@gromacs.org
<mailto:gmx-users@gromacs.org>
<mailto:gmx-users@gromacs.org <mailto:gmx-users@gromacs.org>>
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before
posting!
Please don't post (un)subscribe requests to the list. Use the www
interface or send it to gmx-users-requ...@gromacs.org
<mailto:gmx-users-requ...@gromacs.org>
<mailto:gmx-users-requ...@gromacs.org
<mailto:gmx-users-requ...@gromacs.org>>.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu <http://vt.edu> | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
--
gmx-users mailing list gmx-users@gromacs.org
<mailto:gmx-users@gromacs.org>
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the www
interface or send it to gmx-users-requ...@gromacs.org
<mailto:gmx-users-requ...@gromacs.org>.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
