On Wed, Dec 22, 2010 at 11:23 AM, shikha agarwal <shikhaiiit...@gmail.com>wrote:
> I am trying to simulate a theorical model of a membrane protein in explicit > lipid bilayer membrane environment (DMPC or POPC), I have the pdb > files of this protein and membrane , I have to topolies files this > lipids (dmpc.ip or popc.itp). > How we can create merged topology of lipid and protein and do simulation > step by step. > Do you want to embed the protein in the lipid membrane? For that you can use g_membed. For a step-by-step How to do membrane simulation refer to the link below.... http://www.gromacs.org/Documentation/How-tos/Membrane_Simulations Best Wishes, Sarath > Anybody could help ? > thank you very much ! > > > with regards : > shikha agarwal > IIIT-A > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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