Dear Mark and gromacs users thanks for your time and consideration.
you said by multiplying the existence functions for hbonds between protein and water and the hbonds between water and DNA, then using Justin's script, I can obtain percentage each water medited hydrogen bond during trajectory. and also you said I need to create a corresponding index file too. I don't know where should I start for multiply two existence functions? please explain about it more. any help will highly appreciated. -- Leila Karami Ph.D. student of Physical Chemistry K.N. Toosi University of Technology Theoretical Physical Chemistry Group
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