Hi, Thank you for your answer. Unfortunately, I can't fix my problem.
I dont know if I'm doing this right, but first I type the line "*git clone git://git.gromacs.org/gromacs.git*" in the command line. After all the outputs, I tried to run xpm2ps again, but occured the same error. 2010/10/15 Justin A. Lemkul <jalem...@vt.edu> > > > Maurício Menegatti Rigo wrote: > >> Hi, >> I found the following error when I tried to run xpm2ps. >> >> >> *** glibc detected *** xpm2ps: realloc(): invalid pointer: >> 0x0000000000dd0541 *** >> ======= Backtrace: ========= >> /lib/libc.so.6[0x7f20a53b0dd6] >> /lib/libc.so.6(realloc+0x2e1)[0x7f20a53b67e1] >> xpm2ps(save_realloc+0x5e)[0x43741e] >> xpm2ps[0x42cf24] >> xpm2ps(read_xpm_entry+0x2fe)[0x42d88e] >> xpm2ps(read_xpm_matrix+0xb2)[0x42eaf2] >> xpm2ps(gmx_xpm2ps+0x7a0)[0x41d000] >> /lib/libc.so.6(__libc_start_main+0xfd)[0x7f20a5359abd] >> xpm2ps[0x412949] >> ======= Memory map: ======== >> 00400000-005e3000 r-xp 00000000 fc:03 7799252 >> /usr/local/gromacs/bin/xpm2ps >> 007e2000-007e3000 r-xp 001e2000 fc:03 7799252 >> /usr/local/gromacs/bin/xpm2ps >> 007e3000-007e9000 rwxp 001e3000 fc:03 7799252 >> /usr/local/gromacs/bin/xpm2ps >> 007e9000-007ea000 rwxp 00000000 00:00 0 00dce000-00def000 rwxp 00000000 >> 00:00 0 [heap] >> 7f20a5124000-7f20a513a000 r-xp 00000000 fc:03 17400029 >> /lib/libgcc_s.so.1 >> 7f20a513a000-7f20a5339000 ---p 00016000 fc:03 17400029 >> /lib/libgcc_s.so.1 >> 7f20a5339000-7f20a533a000 r-xp 00015000 fc:03 17400029 >> /lib/libgcc_s.so.1 >> 7f20a533a000-7f20a533b000 rwxp 00016000 fc:03 17400029 >> /lib/libgcc_s.so.1 >> 7f20a533b000-7f20a54a1000 r-xp 00000000 fc:03 17400032 >> /lib/libc-2.10.1.so <http://libc-2.10.1.so> >> 7f20a54a1000-7f20a56a0000 ---p 00166000 fc:03 17400032 >> /lib/libc-2.10.1.so <http://libc-2.10.1.so> >> 7f20a56a0000-7f20a56a4000 r-xp 00165000 fc:03 17400032 >> /lib/libc-2.10.1.so <http://libc-2.10.1.so> >> 7f20a56a4000-7f20a56a5000 rwxp 00169000 fc:03 17400032 >> /lib/libc-2.10.1.so <http://libc-2.10.1.so> >> 7f20a56a5000-7f20a56aa000 rwxp 00000000 00:00 0 7f20a56aa000-7f20a56c1000 >> r-xp 00000000 fc:03 17400305 /lib/libpthread-2.10.1.so< >> http://libpthread-2.10.1.so> >> 7f20a56c1000-7f20a58c0000 ---p 00017000 fc:03 17400305 >> /lib/libpthread-2.10.1.so <http://libpthread-2.10.1.so> >> 7f20a58c0000-7f20a58c1000 r-xp 00016000 fc:03 17400305 >> /lib/libpthread-2.10.1.so <http://libpthread-2.10.1.so> >> 7f20a58c1000-7f20a58c2000 rwxp 00017000 fc:03 17400305 >> /lib/libpthread-2.10.1.so <http://libpthread-2.10.1.so> >> 7f20a58c2000-7f20a58c6000 rwxp 00000000 00:00 0 7f20a58c6000-7f20a58c8000 >> r-xp 00000000 fc:03 17401201 /lib/libutil-2.10.1.so < >> http://libutil-2.10.1.so> >> 7f20a58c8000-7f20a5ac7000 ---p 00002000 fc:03 17401201 >> /lib/libutil-2.10.1.so <http://libutil-2.10.1.so> >> 7f20a5ac7000-7f20a5ac8000 r-xp 00001000 fc:03 17401201 >> /lib/libutil-2.10.1.so <http://libutil-2.10.1.so> >> 7f20a5ac8000-7f20a5ac9000 rwxp 00002000 fc:03 17401201 >> /lib/libutil-2.10.1.so <http://libutil-2.10.1.so> >> 7f20a5ac9000-7f20a5acb000 r-xp 00000000 fc:03 17400035 >> /lib/libdl-2.10.1.so <http://libdl-2.10.1.so> >> 7f20a5acb000-7f20a5ccb000 ---p 00002000 fc:03 17400035 >> /lib/libdl-2.10.1.so <http://libdl-2.10.1.so> >> 7f20a5ccb000-7f20a5ccc000 r-xp 00002000 fc:03 17400035 >> /lib/libdl-2.10.1.so <http://libdl-2.10.1.so> >> 7f20a5ccc000-7f20a5ccd000 rwxp 00003000 fc:03 17400035 >> /lib/libdl-2.10.1.so <http://libdl-2.10.1.so> >> >> 7f20a5ccd000-7f20a5d1b000 r-xp 00000000 fc:03 7921041 >> /usr/local/lib/libopen-pal.so.0.0.0 >> 7f20a5d1b000-7f20a5f1b000 ---p 0004e000 fc:03 7921041 >> /usr/local/lib/libopen-pal.so.0.0.0 >> 7f20a5f1b000-7f20a5f1c000 r-xp 0004e000 fc:03 7921041 >> /usr/local/lib/libopen-pal.so.0.0.0 >> 7f20a5f1c000-7f20a5f1e000 rwxp 0004f000 fc:03 7921041 >> /usr/local/lib/libopen-pal.so.0.0.0 >> 7f20a5f1e000-7f20a5f41000 rwxp 00000000 00:00 0 7f20a5f41000-7f20a5f89000 >> r-xp 00000000 fc:03 7921099 >> /usr/local/lib/libopen-rte.so.0.0.0 >> Aborted >> >> >> I note that someone already had the same problem. Could someone tell me if >> this was fixed? >> > > There have been several fixes to xpm2ps that are available in the > development code. Try the latest git version to see if you still have the > same problem. > > -Justin > > > I'm using the gromacs version 4.5.1, in an i7 processor. >> >> Thanks in advance, >> >> -- >> Maurício M. Rigo >> >> > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Maurício Menegatti Rigo
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
