On 2010-10-13 10.54, Sathish wrote:
Dear Mark,
I have one more doubt. How to run "luck". If i run luck
anywhere its says command not found..
my installed and binary directory cant find luck program. how to do?
without checking luck shall i start to run demo?
Instructions are outdated. The program is now called g_luck
On Wed, Oct 13, 2010 at 3:19 PM, Mark Abraham <mark.abra...@anu.edu.au
<mailto:mark.abra...@anu.edu.au>> wrote:
On 13/10/2010 5:01 PM, Mark Abraham wrote:
On 13/10/2010 4:55 PM, Sathish wrote:
Dear Mark,
Thanks for your reply. In my server gromacs installed at
"local/gromacs". I have checked out point 8 as you mentioned.
It was working with this "source /local/gromacs/bin/GMXRC" command.
That's all you need to do, in every shell from which you want to
use GROMACS. Or, put that command in your shell login scripts
(Google for details).
and also tried , entered "local/gromacs/bin" path and calling to
GMXRC but it shows error
[r...@xxx bin]# GMXRC
/local/gromacs/bin/GMXRC: line 35: return: can only `return' from
a function
or
sourced script
/local/gromacs/bin/GMXRC: line 44: CSH:: command not found
/local/gromacs/bin/GMXRC.csh: line 8: syntax error near
unexpected token `setenv '
/local/gromacs/bin/GMXRC.csh: line 8: `if (! $?LD_LIBRARY_PATH)
setenv
LD_LIBRAR
Y_PATH ""'
[r...@xxx bin]#
This doesn't work, and shouldn't.
And the only thing you should be doing as root are "make install"
and "make links" (if you want the latter). Otherwise you'll trash
your system before you know what you've done.
Mark
kindly help me to fix this problem and luck is not working.
It should, if the "source" command worked.
Mark
On Wed, Oct 13, 2010 at 12:57 PM, Mark Abraham
<mark.abra...@anu.edu.au <mailto:mark.abra...@anu.edu.au>> wrote:
----- Original Message -----
From: Sathish <sathisbioi...@gmail.com
<mailto:sathisbioi...@gmail.com>>
Date: Wednesday, October 13, 2010 14:31
Subject: [gmx-users] Gromacs installation problem @ RHEL5.5
server
To: gmx-users@gromacs.org <mailto:gmx-users@gromacs.org>
> Dear all,
> I have compiled and installed gromacs 4.5.1 on RHEL5.5
server. I have also installed openmpi-1.2.8, fftw-3.2.2 and
gsl-1.11. After gromacs 4.5.1 installation did make tests and
make links. Finally got message "GROMACS is installed under
/root/software" and "binary executable installed
/usr/local/bin". Utill this am not getting any errors.
> Then i was tried to calling "luck" but get "command not
found".I have searched the forum it says binary executable
not in your path.
> Am installing first time and need to know PATH is right
which i given? Could anybody help me to solve this problem?
> Advance thanks..
Check out point 8 of
http://www.gromacs.org/Downloads/Installation_Instructions
Mark
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Regards,
N. Sathishkumar,
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Regards,
N. Sathishkumar,
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