Hellow,
My sequence was processed with SPDBV which add NH3 and COO- at the Nterminal
and Cterminal respectively thereby MD simulation was carried out using
GROMACS versions of 3.3.2 and 4.0. The system was working well.
Now I would like to add protecting groups i.e.acetyl group (CH3CO) and Nmethyl
(NHCH3) at the N and C terminal respectively instead of NH3 and COO- using
Gromacs 4.0.
Kindly suggest me needful action for the said construction. Or kindly suggest
the software which can construct like CH3CO-Gly-trp-lys- - - - - - - - NHCH3
thereby getting output file can be used by GROMACS 4.o for completing my MD of
the molecuel having such a sequence any like CH3CO-Gly-trp-lys- - - - - - - -
NHCH3 .
M. Baskar
e.mail:munu...@yahoo.com
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