History log: 189 ./configure --enable-threads --enable-float --prefix=/fs/home/sm868/fftw-3.2.2 190 make 191 clear 192 make install 193 cd .. 194 cd gromacs 195 ls 196 export CPPFLAGS="-I/fs/home/sm868/fftw-3.2.2/include" 197 export LDFLAGS="-L/fs/home/sm868/fftw-3.2.2/lib" 198 ./bootstrap 199 ls 200 ./configure --prefix=/fs/home/sm868/gromacs 201 make 202 make install
Everything works till I get the following error with make install(after it runs for a while) : make[3]: *** [install-man1] Error 1 make[3]: Leaving directory `/fs/home/sm868/gromacs/man/man1' make[2]: *** [install-am] Error 2 make[2]: Leaving directory `/fs/home/sm868/gromacs/man/man1' make[1]: *** [install-recursive] Error 1 make[1]: Leaving directory `/fs/home/sm868/gromacs/man' make: *** [install-recursive] Error 1 Pooja On Sat, Jun 19, 2010 at 7:49 PM, Mark Abraham <mark.abra...@anu.edu.au>wrote: > > > ----- Original Message ----- > From: Sai Pooja <saipo...@gmail.com> > Date: Sunday, June 20, 2010 9:35 > Subject: Re: [gmx-users] Installing gromacs from git > To: Discussion list for GROMACS users <gmx-users@gromacs.org> > > > I am sorry that was a typo in the mail. It was set to lib > > That makes it hard for us to have confidence in the rest of your command > lines - copying and pasting the results of "history" is a good way to avoid > such problems. > > As such I can only suggest looking for "error" in the last 100 lines of > config.log and seeing what you find. That, and trying it all again :-) > > Mark > > > > On Sat, Jun 19, 2010 at 7:28 PM, Justin A. Lemkul <jalem...@vt.edu>wrote: > >> > >> > >> > Sai Pooja wrote: >> >>> > Hi, >>> > >>> > I followed the following steps to install gromacs from the git >>> repository: >>> > >>> > 1) installed git >>> > 2) got a clone of gromacs using the anonymous option >>> > >>> > 3) installed fftw libraries using >>> > ./configure --enable-float --prefix=/fs/home/sm868 >>> > make >>> > make install >>> > >>> > 4)export CPPFLAGS=-I/fs/home/sm868/include >>> > export LDFLAGS=-L/fs/home/sm868/include >>> > >>> > 6)ran ./bootstrap >>> > 7)ran ./configure --prefix=/fs/home/sm868 >>> > 8)I get the error - checking for sqrt in -lm... yes >>> > checking for fftw3.h... yes >>> > checking for main in -lfftw3f... no >>> > configure: error: Cannot find fftw3f library >>> > >>> >> > >> > You set your LDFLAGS to the /include subdirectory; you want to set it >> to the /lib subdirectory. >> > >> > -Justin >> >> > >> >>> > Can someone help me with this? >>> > >>> > >>> > Pooja >>> > >>> > -- >>> > Quaerendo Invenietis-Seek and you shall discover. >>> > >>> >> > >> > -- >> > ======================================== >> > >> > Justin A. Lemkul >> > Ph.D. Candidate >> > ICTAS Doctoral Scholar >> > MILES-IGERT Trainee >> > Department of Biochemistry >> > Virginia Tech >> > Blacksburg, VA >> > jalemkul[at]vt.edu | (540) 231-9080 >> > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> >> > >> > ======================================== >> > -- >> > gmx-users mailing list gmx-users@gromacs.org >> > http://lists.gromacs.org/mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> >> > Please search the archive at http://www.gromacs.org/search before >> posting! >> > Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to gmx-users-requ...@gromacs.org. >> > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >> > > > > > > > > -- > > Quaerendo Invenietis-Seek and you shall discover. > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at http://www.gromacs.org/search > > before posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Quaerendo Invenietis-Seek and you shall discover.
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
