----- Original Message ----- From: Sai Pooja <saipo...@gmail.com> Date: Sunday, June 20, 2010 9:35 Subject: Re: [gmx-users] Installing gromacs from git To: Discussion list for GROMACS users <gmx-users@gromacs.org>
> I am sorry that was a typo in the mail. It was set to lib That makes it hard for us to have confidence in the rest of your command lines - copying and pasting the results of "history" is a good way to avoid such problems. As such I can only suggest looking for "error" in the last 100 lines of config.log and seeing what you find. That, and trying it all again :-) Mark > On Sat, Jun 19, 2010 at 7:28 PM, Justin A. Lemkul <jalem...@vt.edu> wrote: > > > Sai Pooja wrote: > Hi, > > I followed the following steps to install gromacs from the git repository: > > 1) installed git > 2) got a clone of gromacs using the anonymous option > > 3) installed fftw libraries using > ./configure --enable-float --prefix=/fs/home/sm868 > make > make install > > 4)export CPPFLAGS=-I/fs/home/sm868/include > export LDFLAGS=-L/fs/home/sm868/include > > 6)ran ./bootstrap > 7)ran ./configure --prefix=/fs/home/sm868 > 8)I get the error - checking for sqrt in -lm... yes > checking for fftw3.h... yes > checking for main in -lfftw3f... no > configure: error: Cannot find fftw3f library > > > You set your LDFLAGS to the /include subdirectory; you want to set it to the > /lib subdirectory. > > -Justin > > Can someone help me with this? > > > Pooja > > -- > Quaerendo Invenietis-Seek and you shall discover. > > > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > > > -- > Quaerendo Invenietis-Seek and you shall discover. > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search > before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php
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