nanogroup wrote:
Dear Justin

Many thanks for your response

This is the exact phrase:

"
Use CPPFLAGS and LDFLAGS if the library is installed in a
non-standard location. (see FAQ at http://www.gromacs.org)

If you dont care about performance you can also specify 'fftpack'
to use a slower set of FFTs built into Gromacs.
(Just install FFTW3 unless you really know what you are doing).

"

But I am realy mixed up by defining the fftw!



Without seeing what you're doing, no one can help you. I asked before that you provide the exact commands that you're issuing, as well as a description of what you've installed and where. If you want free help, you have to make it easy for us to help you.

The above quote provides useful information, but there's even an example of how to set CPPFLAGS and LDFLAGS on the same page.

Also, please do not reply to the entire digest. Cut and paste relevant portions if necessary, and set an appropriate subject line. This helps to avoid a lot of junk in the archive.

-Justin

--
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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