There is one web-server in our lab. http://10.188.1.15/3dss/ Use third option.
On Fri, May 7, 2010 at 2:41 PM, Anupam Nath Jha <anu...@mbu.iisc.ernet.in>wrote: > > Dear all > > How can we calculate the rmsd between different monomers from of a protein. > for > example I have a tetramer and I have to calculate the rmsd between chain A > to B, > A to C and A to D with time. > > I was trying using g_rms but couldn't do that. > > thanks with regards > anupam > > > > -- > Science is facts; just as houses are made of stone, so is science is made > of > facts; but a pile of stones is not a house, and a collection of facts is > not > necessarily science. > > Anupam Nath Jha > Ph. D. Student > Saraswathi Vishveshwara Lab > Molecular Biophysics Unit > IISc,Bangalore-560012 > Karnataka > Ph. no.-22932611 > > > > -- > This message has been scanned for viruses and > dangerous content by MailScanner, and is > believed to be clean. > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Yours Sincerely, Shankar Prasad Kanaujia Research Student C/O - Dr. K. Sekar Bioinformatics Centre, SERC Indian Institute of Science, Bangalore-12 Phone - 9480258032 Office - 080-2293-3059
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