Hi, (...) > > Output from make: > > ================= > > (...) > > /bin/sh ../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer > > -finline-functions -Wall -Wno- unused -funroll-all-loops -L/usr/local/lib - > > framework Accelerate -o grompp grompp.o libgmxpreprocess.la > > ../mdlib/libmd.la ../gmxlib/libgmx.la - lxml2 -L/usr/X11/lib -lfftw3f -lm -lSM -lICE -lX11 > > cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused > > -funroll-all-loops -framework Accelerate -o grompp grompp.o -L/usr/local/lib > > ./.libs/libgmxpreprocess.a -L/usr/X11/lib ../mdlib/.libs/libmd.a > > /Users/jrui/Desktop/gromacs- 4.0.7/src/gmxlib/.libs/libgmx.a ../gmxlib/.libs/libgmx.a > > /usr/lib/libxml2.dylib -lpthread -lz -licucore /usr/local/lib/libfftw3f.a > > -lm /usr/X11/lib/libSM.6.dylib /usr/X11/lib/libICE.6.dylib /usr/X11/lib/libX11.6.dylib > > /usr/X11/lib/libXau.6.dylib /usr/X11/lib/libXdmcp.6.dylib > > ld warning: in /usr/local/lib/libfftw3f.a, file is not of required > > architecture > > What does (e.g.) "nm /usr/local/lib/libfftw3f.a" have to say? Also, look > at "ls -l /usr/local/lib/libfftw*" to see whether you're picking up > versions with the timestamps you expect... Maybe your FFTW configuration > only installed dynamic libraries, or something. I don't know why > compiling 4.0.5 would have succeeded, however. > > Mark >
Here is the output from ls: ls -l /usr/local/lib/libfftw* -rw-r--r-- 1 root wheel 2441624 Jul 21 2009 /usr/local/lib/libfftw3.a -rwxr-xr-x 1 root wheel 891 Jul 21 2009 /usr/local/lib/libfftw3.la -rw-r--r-- 1 root wheel 2370752 Jul 21 2009 /usr/local/lib/libfftw3f.a -rwxr-xr-x 1 root wheel 894 Jul 21 2009 /usr/local/lib/libfftw3f.la The output from "nm /usr/local/lib/libfftw3f.a" is so large that it bounced on the mailing list. Here are the first lines: nm /usr/local/lib/libfftw3f.a | head nm: no name list /usr/local/lib/libfftw3f.a(align.o): 0000000000000010 s EH_frame1 0000000000000000 T _fftwf_alignment_of 0000000000000028 S _fftwf_alignment_of.eh /usr/local/lib/libfftw3f.a(alloc.o): 0000000000000090 s EH_frame1 0000000000000082 s LC0 000000000000008a s LC1 Also, "nm -arch i386" returns: nm: file: /usr/local/lib/libfftw3f.a does not contain architecture: i386 while "nm -arch x86_64" returns the same output as nm without options. Meanwhile, I went ahead and, by comparing the line where the 4.0.7 compilation fails with the corresponding line in the 4.0.5 compilation, I noticed that only difference is that the latter contains the cc extra options -m64 - std=gnu99 I guess that 64bit detection is failing. So, I passed these options to configure and the compilation went fine, producing the expected 64bit binaries: ./configure CPPFLAGS=-I/usr/local/include LDFLAGS=-L/usr/local/lib --prefix=/usr/local/gromacs407 -- program-suffix=407 CFLAGS="-m64 -std=gnu99" Thanks, Rui Rodrigues -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
